Publications

Books

Books: 2

2017

- Arlindo L. Oliveira, Mentes Digitais: A Ciência Redefinindo a Humanidade, book, Nov. 2017, IST Press [bibTex]
- Arlindo L. Oliveira, The Digital Mind: How Science is Redefining Humanity, book, Mar. 2017, MIT Press [bibTex]

Book Chapters: 6

2018

- Sérgio Guerreiro, Informed Decision-Making with Enterprise Dynamic Systems Control, Systems and Software Engineering, chapter of Encyclopedia of Information Science and Technology, Jan. 2018, IGI Global [bibTex]
- Sérgio Guerreiro, Challenges of Meta Access Control Model Enforcement to an Increased Interoperability, chapter of Encyclopedia of Information Science and Technology, fourth edition, Systems and Software Engineering, Jan. 2018, IGI Global [bibTex]

2017

- Sérgio Guerreiro and Rui Pascoal, Information Overload in augmented reality the outdoor sports environments, chapter of Information and Communication Overload in the Digital Age, Aug. 2017, IGI Global [bibTex]

2016

- Carlos Páscoa and Bbenjamim Fernandes and José Manuel Nunes Salvador Tribolet, Informed Governance: The Objective Definition Model, pages 363-381, chapter of Handbook of Research on Information Architecture and Management in Modern Organizations, Dec. 2016, IGI Global [bibTex]
- Cristina Mota and Paula Carvalho and Francisco Afonso Raposo and Anabela Barreiro, Generating Paraphrases of Human Intransitive Adjective Constructions with Port4NooJ, chapter of Automatic Processing of Natural Language Electronic Texts with NooJ, Jul. 2016, Springer [bibTex] [PDF]
- Carlos Páscoa and José Manuel Nunes Salvador Tribolet, Actor Network Theory Applied to Organizational Change: A Case Study, Chapter 60, 1314-1330, chapter of Web Design and Development: Concepts, Methodologies, Tools, and Applications., Jan. 2016, IGI Global [bibTex]

Articles

International Journal Articles: 36

2018

- Nuno D. Mendes and Rui Miguel Carrasqueiro Henriques and Elisabeth Remy and Jorge Carneiro and Pedro T. Monteiro and Claudine Chaouiya, Estimating attractor reachability in asynchronous logical models, article in Frontiers in Physiology, Jul. 2018 [DOI Article link] [bibTex]
- Rui Miguel Carrasqueiro Henriques and Sara C. Madeira, Triclustering Algorithms for Three-Dimensional Data Analysis: A Comprehensive Survey, article in ACM Computing Surveys (CSUR), Jun. 2018 [bibTex]
- Paulo Jorge Fernandes Carreira and António Aguiar Costa and Vitor Mansur and Artur A. Arsénio, Can HVAC really learn from users? A simulation-based study on the effectiveness of voting for comfort and energy use optimisation, article in Sustainable Cities and Society, May. 2018, Elsevier [Article] [DOI Article link] [bibTex] [PDF]
- Andreia Teixeira and Pedro T. Monteiro and João A. Carriço and Francisco C. Santos and A. P. Francisco, Large-Scale Simulations of Bacterial Populations over Complex Networks, article in Journal of Computational Biology, May. 2018 [bibTex]
- Francisco Miguel Caramelo Duarte and Bruno Martins and Cátia Sousa Pinto and Mário J. Silva, Deep neural models for ICD-10 coding of death certificates and autopsy reports in free-text, article in Journal of Biomedical Informatics vol. 80 pp. 64-77, Apr. 2018, Elsevier [Article] [DOI Article link] [bibTex]
- Luís M. S. Russo and Andreia Teixeira and A. P. Francisco, Linking and Cutting Spanning Trees, article in Algorithms vol. 11 (4) pp. 53, Apr. 2018, MDPI [DOI Article link] [bibTex]
- Miguel Monteiro and Ana Catarina Fonseca and Ana T. Freitas and Teresa Pinho e Melo and A. P. Francisco and José M. Ferro and Arlindo L. Oliveira, Using Machine Learning to Improve the Prediction of Functional Outcome in Ischemic Stroke Patients, article in ACM/IEEE Transactions cn Computational Biology and Bioinformatics (3), Mar. 2018 [DOI Article link] [bibTex] [PDF]
- João Carriço and Maxime Crochemore and A. P. Francisco and Solon Pissis and Bruno Ribeiro‑Gonçalves and Cátia Vaz, Fast phylogenetic inference from typing data, article in Algorithms for Molecular Biology vol. 13 (4), Feb. 2018, BioMed Central [DOI Article link] [bibTex]
- Luís Moreira de Sousa and Alberto Rodrigues da Silva, Usability Evaluation of the Domain Specific Language for Spatial Simulation Scenarios, article in Cogent Engineering vol. 5 (1), Feb. 2018, Cogent [DOI Article link] [bibTex]
- Sérgio Guerreiro, Using Markov Theory to Deliver Informed Decisions in Partially Observable Business Processes Operation, article in International Journal of Operations Research and Information Systems (IJORIS) vol. 9 (2) pp. 53--72, Jan. 2018, IGI Global [DOI Article link] [bibTex]

2017

- Miguel bastos Alves and Paulo Jorge Fernandes Carreira and António A. Costa, BIMSL: A Generic Approach to the Integration of Building Information Models with Real-time Sensor Data, article in Automation in Construction, to appear on 2017, Elsevier [bibTex] [PDF]
- Henrique Ramalho Monteiro Latourrette Pombeiro and Rodolfo André Henriques dos Santos and Paulo Jorge Fernandes Carreira and Carlos Silva and João M. C. Sousa, Comparative assessment of low-complexity models to predict electricity consumption in an institutional building: Linear regression vs. fuzzy modeling vs. neural networks , article in Energy and Buildings vol. 146 pp. 141--151, to appear on 2017, Elsevier [DOI Article link] [bibTex]
- Paulo Jorge Fernandes Carreira and Gonçalo Mendes and Bruno Fontes Barroca and Vasco Amaral and Samuli Honkapuro and Rui Prada, Energy behaviour engagement in smart urban environments, article in Energy Procedia vol. 142 pp. 2080-2088, Dec. 2017, Elsevier [Article] [DOI Article link] [bibTex]
- Andreia Teixeira and Francisco Fernandes and A. P. Francisco, SpliceTAPyR - An Efficient Method For Transcriptome Alignment, article in International Journal of Foundations of Computer Science, to appear on 2017, Blackwell Publishing Inc. [Supplementary Material] [bibTex]
- Paulo Jorge Fernandes Carreira and Alfredo Ferreira and Cláudia RIbeiro and Cristina C. Gomes and António A. Costa, Virtual Reality as Integration Environments for Facilities Management: Application and Users Perception, article in Engineering, Construction and Architectural Management Journal, to appear on 2017 [bibTex]
- Rui Miguel Carrasqueiro Henriques and Sara C. Madeira, BSig: Evaluating the Statistical Significance of Biclustering Solutions, article in Data Mining and Knowledge Discovery vol. 32 (1) pp. 124–161, Oct. 2017, Springer [DOI Article link] [bibTex]
- Rui Santos and Patricia Murrieta-Flores and Pável Calado and Bruno Martins, Toponym Matching through Deep Neural Networks, article in International Journal of Geographical Information Science vol. 32 (2) pp. 324--348, Oct. 2017 [Article] [DOI Article link] [bibTex]
- Miguel Costa and Daniel Gomes and Mário J. Silva, The evolution of web archiving, article in International Journal on Digital Libraries vol. 18 (18) pp. 191-205, Sep. 2017, Springer [Article] [DOI Article link] [bibTex]
- Maria Raimundo and Susana Santos and Joana Mendonça and Ana T. Freitas, Are You Eating Right? Ask Your Genes: Developing a Value Proposition in Nutrigenetics, article in Annals of Nutrition and Metabolism vol. 71 pp. 38, Jul. 2017 [DOI Article link] [bibTex]
- Jorge dos Santos Oliveira and Wydemberg J. Araújo and Ricardo M. Figueiredo and Rita C. B. Silva-Portela and Alaine de Brito Guerra and Sinara Carla da Silva Araújo and Carolina Minnicelli and Aline Cardoso Carlos and Ana Tereza Ribeiro de Vasconcelos and Ana T. Freitas and Lucymara F. Agnez-Lima, Biogeographical distribution analysis of hydrocarbon degrading and biosurfactant producing genes suggests that near equatorial biomes have higher abundance of genes with potential for bioremediation, article in BMC Microbiology vol. 17 pp. 168, Jul. 2017, Biomed Central [DOI Article link] [bibTex]
- André Menolli and H. Sofia Pinto and Sheila Reinehr and Andreia Malucelli, SECOL: a semantic environment based on social media to support organisational learning, article in Behaviour \& Information Technology vol. 36 (4) pp. 364-389, Jun. 2017, Taylor&Francis [DOI Article link] [bibTex]
- Daniel H. Dalip and Marcos André Gonçalves and Marco Cristo and Pável Calado, A General Multiview Framework for Assessing the Quality of Collaboratively Created Content on Web 2.0, article in Journal of the American Society for Information Science and Technology vol. 68 (2) pp. 286--308, Feb. 2017 [DOI Article link] [bibTex]
- Rui Miguel Carrasqueiro Henriques and Francisco Luis Sarreira Lourenço Ferreira and Sara C. Madeira, BicPAMS: software for biological data analysis with pattern-based biclustering, article in BMC Bioinformatics vol. 18 (82), Feb. 2017 [DOI Article link] [bibTex]
- Thiago Elias and Icaro Pinto and Luciano Costa and Paulo Carvalho and Daniel Omote and Ihosvany Camps and Tati Ishikawa and Helen Arcuri and Susana Vinga and Arlindo L. Oliveira and Walter Junior and Nelson Silveira, Computational Approach to the Discovery of Phytochemical Molecules with Therapeutic Potential Targets to the PKCZ protein, article in Letters in Drug Design & Discovery vol. 14 pp. 1-12, Jan. 2017, Bentham Science [DOI Article link] [bibTex] [PDF]

2016

- Paulo Jorge Fernandes Carreira and José Cavalheiro, A multidimensional data model design for building energy management, article in Advanced Engineering Informatics vol. 30 pp. 619-632, to appear on 2016, Elsevier [DOI Article link] [bibTex]
- Paulo Jorge Fernandes Carreira and Pedro Lima and Pedro Fazenda, Context-based thermodynamic modeling of buildings spaces, article in Energy and Buildings vol. 124 pp. 164-177, to appear on 2016, Elsevier [DOI Article link] [bibTex]
- André Veríssimo and Arlindo L. Oliveira and Marie-France Sagot and Susana Vinga, DegreeCox–a network-based regularization method for survival analysis, article in BMC Bioinformatics vol. 17 (16) pp. 109-121, Dec. 2016, Biomed Center [DOI Article link] [bibTex] [PDF]
- Rui Miguel Carrasqueiro Henriques and Sara C. Madeira, BiC2PAM: constraint-guided biclustering for biological data analysis with domain knowledge, article in Algorithms for Molecular Biology vol. 11 (23) pp. 1-23, Sep. 2016 [DOI Article link] [bibTex]
- Marta Alexandra Fragoso Nascimento and A. Sousa and M. Ramirez and A. P. Francisco and João Carriço and Cátia Vaz, PHYLOViZ 2.0: Providing scalable data integration and visualization for multiple phylogenetic inference methods, article in Bioinformatics, Sep. 2016 [DOI Article link] [bibTex]
- Rui Miguel Carrasqueiro Henriques and Sara C. Madeira, BicNET: Flexible Module Discovery in Large-Scale Biological Networks using Biclustering, article in Algorithms for Molecular Biology vol. 11 (14) pp. 1-30, May. 2016, BioMed Central [DOI Article link] [bibTex]
- Miguel Costa and Daniel Gomes and Mário J. Silva, The Evolution of Web Archiving International Journal on Digital Libraries, article in International Journal on Digital Libraries, May. 2016, Springer [Article] [DOI Article link] [bibTex]
- Pedro Rijo and A. P. Francisco and Mário J. Silva, Evaluating the impact of k-anonymization on the inference of interaction networks, article in Transactions on Data Privacy vol. 9 (1) pp. 49-72, Apr. 2016, U. of Skövde, [Article] [bibTex] [PDF]
- Luís M. S. Russo and A. P. Francisco, Extending quick hypervolume, article in Journal of Heuristics pp. 1-27, Mar. 2016, Springer [Article] [DOI Article link] [bibTex]
- Paula Cristina Negrão Ventura Martins and Alberto Rodrigues da Silva, Process and Project Alignment Methodology - A Case-Study based Analysis, article in Computer Science and Information Systems vol. 13 (3), Mar. 2016 [DOI Article link] [bibTex]
- Luis de Sousa and Alberto Rodrigues da Silva, A Domain Specific Language for Spatial Simulation Scenarios, article in GeoInformatica vol. 20 (1) pp. 117-149, Jan. 2016, Springer [Article] [bibTex]
- B. Ribeiro-Gonçalves and A. P. Francisco and Cátia Vaz and M. Ramirez and João Carriço, PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees, article in Nucleic Acids Research, Jan. 2016 [DOI Article link] [bibTex]

International Conferences: 58

2018

- Hugo Rosa and Joao P. Carvalho and Pável Calado and Bruno Martins and Luísa Coheur and Ricardo Ribeiro, Using Fuzzy Fingerprints for Cyberbullying Detection in Social Networks, presented at 2018 IEEE International Conference on Fuzzy Systems (FUZZ-IEEE), Jul. 2018 [bibTex] [PDF]
- Sérgio Guerreiro and Miguens, J., Mira da Silva, M., A Viewpoint for Representing Costs in Enterprise Architectures, presented at 20th IEEE Conference on Business Informatics, Jun. 2018 [bibTex]
- Sérgio Guerreiro and Silva, D., Sousa, P., Conceptualizing DEMO business transactions with Blockchain Hyperledger Composer to enable Traceability and Control, presented at EEWC, Jun. 2018 [bibTex]
- Rui Miguel Carrasqueiro Henriques and Sara C. Madeira, Order-preserving Pattern Matching Indeterminate Strings, presented at Symposium on Combinatorial Pattern Matching (CPM), Jun. 2018 [bibTex]
- André Carvalho and Pável Calado and Joao P. Carvalho, Tag-Based User Fuzzy Fingerprints for Recommender Systems, presented at IPMU2018 - 17th International Conference on Information Processing and Management of Uncertainty in Knowledge-Based Systems, Jun. 2018 [bibTex] [PDF]
- João Manuel Policarpo Moreira and Helena Galhardas and Miguel Pardal, LeanBench: comparing software stacks for batch and query processing of IoT data, presented at International Conference on Ambient Systems, Networks and Technologies (ANT), May. 2018 [bibTex]

2017

- T. Goosen and Nuno Miguel Antunes Freire and C. Neudecker and M. Eskevich, Bringing Europeana and CLARIN together: Dissemination and exploitation of cultural heritage data in a research infrastructure, presented at Digital Infrastructures for Research 2017, Dec. 2017 [bibTex]
- P. Dugenie and Nuno Miguel Antunes Freire and D. Broeder, Building new knowledge from distributed scientific corpus: HERBADROP & EUROPEANA: Two concrete case studies for exploring big archival data, presented at 2017 IEEE International Conference on Big Data (Big Data), 2017, Dec. 2017 [DOI Article link] [bibTex]
- Nuno Miguel Antunes Freire and R. Wallis and A. Isaac and V. Charles and Hugo Miguel Álvaro Manguinhas, Perspectives on using Schema.org for publishing and harvesting metadata at Europeana’ , presented at SWIB17 Semantic Web in Libraries Conference, Dec. 2017 [bibTex]
- Gu'edria, W., van Kervel, S., Lagerstrom, R. and Sérgio Guerreiro, A Meta Model for Interoperability of Secure Business Transactions - Using BlockChain and DEMO, presented at Proceedings of the 9th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management (KEOD), Nov. 2017 [DOI Article link] [bibTex]
- Sérgio Guerreiro and Guédria, W., Dynamic Behavior Control of Interoperability: An Ontological Approach, presented at Proceedings of the 9th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management, Nov. 2017 [DOI Article link] [bibTex]
- Miguel E. Coimbra and Mennan Selimi and A. P. Francisco and Felix Freitag and Luís Veiga, Gelly-Scheduling: Distributed Graph Processing for Service Placement in Community Networks, presented at 33rd ACM/SIGAPP Symposium On Applied Computing (SAC 2018), Nov. 2017 [bibTex]
- V. Charles and J. Stiller and P. Király and W. Bailer and Nuno Miguel Antunes Freire, Data Quality Assessment in Europeana: Metrics for Multilinguality, presented at International Conference on Theory and Practice of Digital Libraries 2017, Sep. 2017 [bibTex]
- André Carvalho and Pável Calado and Joao P. Carvalho, Fuzzy Fingerprints for Item-Based Collaborative Filtering, presented at 10th Conference of the European Society for Fuzzy Logic and Technology - EUSFLAT2017, Sep. 2017 [bibTex]
- Nuno Miguel Antunes Freire and G. Robson and J. B. Howard and Hugo Miguel Álvaro Manguinhas and A. Isaac, Metadata Aggregation: Assessing the Application of IIIF and Sitemaps Within Cultural Heritage, presented at International Conference on Theory and Practice of Digital Libraries 2017, Sep. 2017 [bibTex]
- Andreia Teixeira and Pedro T. Monteiro and João Carriço and Francisco C. Santos and A. P. Francisco, Using Spark and GraphX to Parallelize Large-Scale Simulations of Bacterial Populations over Host Contact Networks, presented at International Conference on Algorithms and Architectures for Parallel Processing (ICA3PP'17), Sep. 2017 [DOI Article link] [bibTex]
- Francisco Miguel Caramelo Duarte and Bruno Martins and Cátia Sousa Pinto and Mário J. Silva, A Deep Learning Method for ICD-10 Coding of Free-Text Death Certificates, presented at EPIA 2017: Progress in Artificial Intelligence, Aug. 2017 [DOI Article link] [bibTex]
- Miguel Monteiro and Ana Catarina Fonseca and Ana T. Freitas and Teresa Pinho e Melo and A. P. Francisco and Jose M Ferro and Arlindo L. Oliveira, Improving the Prediction of Functional Outcome in Ischemic Stroke Patients, presented at BIOKDD 2017, Aug. 2017 [bibTex] [PDF]
- Bruno Miguel das Neves Dantas and Calmenelias Pino Fleitas and Alexandre Teixeira de Almeida and João Nuno Gonçalves Forja and A. P. Francisco and José Simão and Cátia Vaz, NGSPipes: Fostering Reproducibility and Scalability in Biosciences, presented at 8th International Conference on Bioinformatics, Computational Biology, and Health Informatics, Aug. 2017 [bibTex]
- Pradeeban Kathiravelu and Yiru Chen and Ashish Sharma and Helena Galhardas and Peter Van Roy and Luís Veiga, On-Demand Service-Based Big Data Integration: Optimized for Research Collaboration, presented at VLDB Workshop on Data Management and Analytics for Medicine and Healthcare (DMAH), Aug. 2017 [bibTex] [PDF]
- Maxime Crochemore and A. P. Francisco and Solon P. Pissis and Cátia Vaz, Towards distance-based phylogenetic inference in average-case linear-time, presented at WABI, Aug. 2017 [DOI Article link] [bibTex]
- Nuno F. Lages and Bernardo Silva Caetano and Manuel J Fonseca and João Carlos Serrenho Dias Pereira and Helena Galhardas and Rui Farinha, Umedicine: A System for Clinical Practice Support and Data Analysis, presented at VLDB Workshop on Data Management and Analytics for Medicine and Healthcare (DMAH), Aug. 2017 [bibTex]
- André Carvalho and Pável Calado and Joao P. Carvalho, Combining Ratings and Item Descriptions in Recommendation Systems
using Fuzzy Fingerprints, presented at FUZZ-IEEE, 2017 IEEE International Conference on Fuzzy Systems, Jul. 2017 [bibTex]
- Diogo Miguel Barrinha Barradas and Tiago Brito and David Duarte and Nuno Santos and Luis Rodrigues, Forensic Analysis of Communication Records of Web-based MessagingApplications from Physical Memory., presented at The 14th International Conference on Security and Cryptography, Jul. 2017 [bibTex]
- Sérgio Guerreiro, Locating and visualizing the most valuable business processes states in large control policy graphs produced by POMDP, presented at 19th IEEE Conference on Business Informatics (CBI), Jul. 2017 [DOI Article link] [bibTex]
- Luis Pedro Coelho and Paulo Monteiro and Renato Alves and Ana T. Freitas and Peer Bork, NGLESS: A tool for perfectly understandable and reproducible metagenomics pipelines based on a domain-specific language, presented at ISMB BOSC 2017, Jul. 2017 [bibTex]
- Andreia Teixeira and Pedro T. Monteiro and João Carriço and Francisco C. Santos and A. P. Francisco, Using Spark and MapReduce to Parallelize Large Scale Simulations Over Host Contact Networks, Jul. 2017 [bibTex]
- Joana Borges Teixeira and H. Sofia Pinto, Cross-Domain Analogy: From Image to Music, presented at 5th International Workshop on Musical Metacreation, Jun. 2017 [bibTex]
- Sérgio Guerreiro and Br'as, J., DEMO Business Processes Design to Improve the Enterprise Business Continuity Plans, presented at Advances in Enterprise Engineering XI. EEWC 2017, Jun. 2017 [DOI Article link] [bibTex]
- Sérgio Guerreiro, Designing a Decision-Making Process for Partially Observable Environments Using Markov Theory, presented at Enterprise, Business-Process and Information Systems Modeling, Jun. 2017 [DOI Article link] [bibTex]
- Nuno Miguel Antunes Freire and Hugo Miguel Álvaro Manguinhas and A. Isaac and G. Robson and J. B. Howard, Web technologies: a survey of their applicability to metadata aggregation in cultural heritage, presented at 21st International Conference on Electronic Publishing, Jun. 2017 [bibTex]
- Rui Abreu and Alexandre Perez, A test-suite diagnosability metric for spectrum-based fault localization approaches, presented at Proceedings of the 39th International Conference on Software Engineering (ICSE), May. 2017 [bibTex]
- Paulo Jorge Fernandes Carreira and Anatolijs Zabasta and Oksana Nikiforova and Nadezda Kunicina and Uldis Sukovskis and Leonids Ribickis and Vasco Amaral and Paulo Carreira and Miguel Goulão, Developing a Mutually-Recognized Cross-Domain Study Program in Cyber-Physical Systems , presented at 8th IEEE Global Engineering Education Conference (EDUCON 2017), May. 2017 [DOI Article link] [bibTex]
- Rui Abreu and Spencer Pearson and Jose Campos and Gordon Fraser and Michael D Ernst and Deric Pang and Benjamin Keller, Evaluating & improving fault localization techniques, presented at Proceedings of the 39th International Conference on Software Engineering (ICSE), May. 2017 [bibTex]
- Rui Abreu and Luís Cruz, Leafactor: Improving energy efficiency of android apps via automatic refactoring, presented at 2017 IEEE/ACM 4th International Conference on Mobile Software Engineering and Systems (MOBILESoft), May. 2017 [bibTex]
- Rui Abreu and Luís Cruz, Performance-based guidelines for energy efficient mobile applications, presented at 2017 IEEE/ACM 4th International Conference on Mobile Software Engineering and Systems (MOBILESoft), May. 2017 [bibTex]
- Rui Abreu and Alexandre Perez and Marcelo D'Amorim, Prevalence of single-fault fixes and its impact on fault localization, presented at IEEE International Conference on Software Testing, Verification and Validation (ICST), Apr. 2017 [bibTex]
- Andreia Teixeira and Francisco C. Santos and A. P. Francisco, Emergence of social balance in signed networks, presented at CompleNet 2017, Mar. 2017 [DOI Article link] [bibTex]

2016

- Diogo Proença and José Manuel Nunes Salvador Tribolet and José Borbinha, Modeling the Value of Digital Preservation Activities, presented at  CENTERIS 2016 - Conference on ENTERprise Information Systems ,October 5-7, 2016 , Oct. 2016 [DOI Article link] [bibTex]
- Ana Tellha and Alexandre Rodrigues and Carlos Páscoa and José Manuel Nunes Salvador Tribolet, The Competency Architecture as Error Limiting Element and Efficiency Enhancer in Business Processes, presented at CENTERIS 2016 - Conference on ENTERprise Information Systems ,October 5-7, Oct. 2016 [DOI Article link] [bibTex]
- Ana Telha and Alexandre Rodrigues and Carlos Páscoa and José Manuel Nunes Salvador Tribolet, Transversal Competency Concept as a Structuring Element of the Organization, presented at CENTERIS 2016 - Conference on ENTERprise Information Systems,October 5-7, 2016, Oct. 2016 [DOI Article link] [bibTex]
- Sílvio Moreira and Wallace, Byron C. and Lyu, Hao and Paula Carvalho and Mário J. Silva, odelling Context with User Embeddings for Sarcasm Detection in Social Media, presented at CoNLL - The 20th SIGNLL Conference on Computational Natural Language Learning, Aug. 2016 [bibTex]
- Sílvio Moreira and Ramon Fernandez Astudillo and Wang Ling and Mário J. Silva and Isabel Trancoso, INESC-ID at SemEval-2016 Task 4-A: Reducing the Problem of Out-of-Embedding Words, presented at International Workshop on Semantic Evaluation (SemEval-2016), Jul. 2016 [bibTex]
- Andreia Teixeira and Francisco Fernandes and A. P. Francisco, SpliceTAPyR - Efficient method for transcriptome alignment, presented at MatBio 2016: 1st International Student Conference on the Mathematical Foundations in Bioinformatics, Jul. 2016 [DOI Article link] [bibTex]
- Alberto Rodrigues da Silva, RSLingo4Privacy: An Integrated Approach to Improve the Specification and Analysis of Privacy Policies, presented at Proceedings of International Symposium SymOrg’2016, Jun. 2016 [bibTex]
- Alexey Sergeev and José Manuel Nunes Salvador Tribolet, Extended Viable System Model, presented at 6th Enterprise Engineering Working Conference, EEWC 2016, May. 2016 [DOI Article link] [bibTex]
- João Pombinho and Carlos Mendes and Bruno Alexandre Barbosa Fragoso and Ricardo Manuel Simões dos Santos and Nuno Miguel Carvalho da Silva and Elton Pedro Sixpence and José Manuel Nunes Salvador Tribolet, Objectifying Value Co-creation–An Exploratory Study, presented at Sixth Enterprise Engineering Working Conference, EEWC 2016, May 30-June , May. 2016 [DOI Article link] [bibTex]
- João Pedro Marques Pombinho and Carlos Manuel Martins Mendes and Bruno Alexandre Barbosa Fragoso, Objectifying Value Co-creation–An Exploratory Study, presented at Engineering Working Conference, EEWC 20116, Funchal, Madeira, Portugal, May. 2016 [DOI Article link] [bibTex]
- Cristina Mota and Paula Carvalho and Anabela Barreiro, Port4NooJ v3.0: Integrated Linguistic Resources for Portuguese NLP, presented at Proceedings of the Tenth International Conference on Language Resources and Evaluation (LREC 2016), May. 2016 [bibTex] [PDF]
- Carlos Bartolomeu and Angel Manuel Bravo Gestoso and Luis Rodrigues, Dynamic Adaptation of Geo-Replicated CRDTs, presented at The 31st ACM/SIGAPP Symposium on Applied Computing (SAC), Dependable and Adaptive Distributed Systems Track, Apr. 2016 [bibTex]
- Dragana Aleksić, Dušan Savić, Siniša Vlajić and Alberto Rodrigues da Silva and Vojislav Stanojević, Ilija Antović, Miloš Milić, Generate User Interface Using Xtext Framewor, presented at Proceedings of the International Conference on Information Society and Technology (ICIST 2016), Apr. 2016 [bibTex]
- Alberto Rodrigues da Silva and João Caramujo and Sharareh Moghadam Monfared and Pável Calado and Travis Breaux, Improving the Specification and Analysis of Privacy Policies: The RSLingo4Privacy Approach, presented at Proceedings of ICEIS’2016 Conference, Apr. 2016 [bibTex]
- Bruno Filipe Silva Dias and H. Sofia Pinto and David Martins de Matos, BPMTimeline: JavaScript Tempo Functions and Time Mappings using an Analytical Solution, presented at 2nd Web Audio Conference (WAC), Mar. 2016 [bibTex]
- Hugo Manuel Antunes Lopes and H. Sofia Pinto and A. P. Francisco, Influence and Sentiment Homophily on Twitter Social Circles, presented at Complex Networks VII: Proceedings of the 7th Workshop on Complex Networks CompleNet 2016, Mar. 2016 [DOI Article link] [bibTex]
- Andreia Teixeira and Francisco C. Santos and A. P. Francisco, Spanning edge betweenness in practice, presented at CompleNet, Mar. 2016 [DOI Article link] [bibTex]
- Bruno Filipe Silva Dias and David Martins de Matos and Matthew E.P. Davies and H. Sofia Pinto, Time Stretching & Pitch Shifting with the Web Audio API: Where are we at?, presented at 2nd Web Audio Conference (WAC), Mar. 2016 [bibTex]
- André Filipe Oliveira Pinto Ribeiro and Luis Sousa and Alberto Rodrigues da Silva, Comparative Analysis of Workbenches to Support DSMLs: Discussion with Non-Trivial Model-Driven Development Needs, presented at Proceedings of MODELSWARD’2016, Feb. 2016 [bibTex]
- Paulo Filipe and André Filipe Oliveira Pinto Ribeiro and Alberto Rodrigues da Silva, XIS-CMS: Towards a Model-Driven Approach for Developing Platform-Independent CMS-Specific Modules, presented at Proceedings of MODELSWARD’2016, Feb. 2016 [bibTex]

National Conferences: 3

2017

- José Borbinha and Adelino Canário, ELIXIR Portugal: Platforms, Use Cases and Services, presented at Bioinformatics Open Day, Feb. 2017 [bibTex]

2016

- Calmenelias Pino Fleitas and Bruno Miguel das Neves Dantas and A. P. Francisco and Cátia Vaz and José Simão, NGSPipes: From Specification to Automatic Deployment of NGS pipelines, presented at Inforum, Sep. 2016 [bibTex]
- Samuel M. Coelho and Miguel Filipe Ribeiro Pais, Smart Places: A framework to develop proximity-based mobile applications , presented at INForum, Sep. 2016 [bibTex]

National Journal Articles: 2

2017

- José Manuel Nunes Salvador Tribolet and Paulo Ferreira and Miguel Correia and Carlos Nuno da Cruz Ribeiro and Pedro Adão and Nelson Escravana., Cybersecurity: the role of informatics engineering, article in Revista da Ordem dos Engenheiros, May. 2017 [Article] [bibTex]

2016

- Pedro Fialho and Ricardo Miguel Machado Marques and Bruno Martins and Luísa Coheur and Paulo Quaresma, INESC-ID@ASSIN: Medição de Similaridade Semântica e Reconhecimento de Inferência Textual}, article in Linguamática pp. 33-42, Dec. 2016 [bibTex]

Dissertations

PhD Theses: 8

2018

- Jorge dos Santos Oliveira and Ana T. Freitas and Lucymara Agnez-Lima advised by Ana T. Freitas, Prospecção de genes aplicados à biodegradação de hidrocarbonetos e produção de surfactantes utilizando abordagens computacionais, PhD Thesis at University of Lisbon - IST, Apr. 2018 [bibTex]

2016

- Marzieh Bakhshandeh advised by José Borbinha and Catia Pesquita, Ontology-driven Analysis of Enterprise Architecture Models, PhD Thesis at Instituto Superior Técnico - University of Lisbon, Jul. 2016 [bibTex] [PDF]
- André Carreiro advised by Sara C. Madeira and Mamede de Carvalho, An integrative mining approach to unravel prognostic markers in neurodegenerative diseases, PhD Thesis at Instituto Superior Técnico, Technical University of Lisbon, Jun. 2016 [bibTex]
- Gonçalo Fernandes Simões advised by Helena Galhardas and Luís Gravano, When Speed Has a Price: Fast Information Extraction Using Approximations, PhD Thesis at Instituto Superior Técnico, Jun. 2016 [bibTex]
- Luis de Sousa advised by Alberto Rodrigues da Silva, DSL3S: Domain Specific Language for Spatial Simulation Scenarios, PhD Thesis at Instituto Superior Técnico da Universidade Técnica de Lisboa, Apr. 2016 [bibTex]
- Andras Hartmann advised by Susana Vinga and J. M. Lemos, Identification of HIV-1 Infection models, PhD Thesis at Instituto Superior Técnico, Universidade Técnica de Lisboa, Jan. 2016 [bibTex]
- David Soares Batista advised by Mário J. Silva, Large-Scale Semantic Relationship Extraction for Information Discovery, PhD Thesis at Instituto Superior Técnico, Universidade de Lisboa, Jan. 2016 [bibTex]
- Rui Miguel Carrasqueiro Henriques advised by Sara C. Madeira, Learning from High-Dimensional Data using Local Descriptive Models, PhD Thesis, Jan. 2016 [bibTex]

MSc Theses: 44

2018

- André Ricardo Anselmo Félix advised by Luísa Coheur and Pável Calado, Watson contra o Mundo, MSc Thesis, Jun. 2018 [bibTex]

2017

- João Gonçalo Nunes Vicente Marques Ceia advised by H. Sofia Pinto, Questionaire System for Human Resources , MSc Thesis, Dec. 2017 [bibTex]
- João Manuel Policarpo Moreira advised by Miguel Pardal and Helena Galhardas, Comparing software stacks for Big Data batch processing, MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, Nov. 2017 [bibTex]
- Daiane Pereira de Oliveira advised by Alberto Rodrigues da Silva, dDocs/Dashboards: Data Analytics for a Citizen-Centric Platform, MSc Thesis at IST-UL, Nov. 2017 [bibTex]
- Lufialuiso Sampaio Velho advised by Mário J. Silva and Pável Calado, Emparelhamento de Dados Censitários, MSc Thesis, Nov. 2017 [bibTex] [PDF]
- Carolina Sofia Lisboa Sequeira advised by Alberto Rodrigues da Silva, Especificação rigorosa de requisitos de usabilidade para software, MSc Thesis at IST-UL, Nov. 2017 [bibTex]
- Mauro Domingues Teles advised by Bruno Martins and David Martins de Matos, Geocodificação e Datação Automática de Obras Musicais com, Base no Conteúdo Áudio, MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, Nov. 2017 [bibTex]
- Pedro Miguel Cecílio Lopes advised by Alberto Rodrigues da Silva, ITBox: A Collaborative Platform for Better Managing Technical Documentation, MSc Thesis, Nov. 2017 [bibTex]
- Rui Menezes da Silva advised by Mário J. Silva and Pável Calado, Matching Census Data Records, MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, Nov. 2017 [bibTex] [PDF]
- João Francisco Vieira Gonçalves advised by Alberto Rodrigues da Silva, ProjectLingo: Rigorous Specification of Project Plans, MSc Thesis at IST-UL, Nov. 2017 [bibTex]
- Miguel Pedro da Custódia Conceição advised by Alberto Rodrigues da Silva, RSLingo-Studio: A Tool for Rigorous Requirements Specification, Validation and Transformation, MSc Thesis at IST-UL, Nov. 2017 [bibTex]
- Barbara Luis Sequeira de Pinho advised by Mário J. Silva and Bruno Martins, Sleep Desorders Clinical Database, MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, Nov. 2017 [bibTex] [PDF]
- Tiago André Ferreira Castanheira advised by Mário J. Silva and Bruno Martins, Sleep Desorders Clinical Database, MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, Nov. 2017 [bibTex] [PDF]
- André Domingues advised by Daniel Simões Lopes and Joaquim Armando Pires Jorge, André Filipe Pinto Domingues , MSc Thesis at Universidade de Lisboa, Oct. 2017 [bibTex]
- Francisco Ribeiro Duarte advised by Mário J. Silva and Bruno Martins, Automated Classification of Causes of Mortality, MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, Oct. 2017 [bibTex]
- Carlos Ribeiro advised by Paolo Romano and Bruno Martins, Scalable and Memory-Efficient Approaches for Spatial Data Downscaling Leveraging Machine Learning, MSc Thesis at Ist, Lisbon University , Oct. 2017 [bibTex]
- Diogo Lima Nicolau advised by Pável Calado, Construção de Vizinhanças através da Popularidade de Itens em Métodos Colaborativos, MSc Thesis at Instituto Superior Técnico, Sep. 2017 [bibTex]
- Diogo Filipe Pimenta Andrade advised by Mário J. Silva and Bruno Martins, A Prototype Infrastructure for Sentinel Earth Observation Data Relative to Portugal, MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, Jun. 2017 [bibTex] [PDF]
- Joana Borges Teixeira advised by H. Sofia Pinto, Cross-Domain Analogy: From Image to Music, MSc Thesis, May. 2017 [bibTex]
- Nuno Filipe Gonçalves das Lages advised by Helena Galhardas and João Carlos Serrenho Dias Pereira, Umedicine: A System for Clinical Practice Support and Data Analysis, MSc Thesis, May. 2017 [bibTex]
- Miguel Neves Neto advised by Helena Galhardas and João Carlos Serrenho Dias Pereira, Umedicine: Medical Data Visualization Module, MSc Thesis, May. 2017 [bibTex]
- André Reis advised by Alberto Rodrigues da Silva, XIS-Reverse: A Model-Driven Reverse Engineering Approach, MSc Thesis at IST-UL, May. 2017 [bibTex]
- Margarida Filipa Leal Correia advised by H. Sofia Pinto, Fashion Recommender System (only project), MSc Thesis, Feb. 2017 [bibTex]

2016

- Filipe Nuno Marques Pires da Silva advised by Bruno Martins and David Martins de Matos, Computational Detection of Irony in Textual Messages, MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, Nov. 2016 [bibTex]
- Rodrigo António Machado dos Santos advised by Alberto Rodrigues da Silva and André Filipe Oliveira Pinto Ribeiro, dDocs – A Citizen-Centric Electronic Document and Record Management System, MSc Thesis, Nov. 2016 [bibTex]
- Sofia Baptista Cerqueira Estêvão Modesto advised by Miguel Mira da Silva and Daniel Jorge Viegas Gonçalves, Gamification in Information Systems Development, MSc Thesis, Nov. 2016 [bibTex]
- João Pedro Nunes da Costa Fernandes advised by Alberto Rodrigues da Silva, REBox: Collaborative Environment for Requirements Engineering, MSc Thesis, Nov. 2016 [bibTex]
- Filipe Alexandre Clemente Cardoso advised by Mário J. Silva and Cátia Sofia de Sousa Pinto, Reengineering the eVM Mortality Surveilance Portal: Information Collection, Analysis and Publication, MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, Nov. 2016 [bibTex]
- João Paulo de Matos Caramujo advised by Alberto Rodrigues da Silva and Pável Calado, RSLingo4Privacy: Tools to Improve Consistency Between Privacy Policies and Current Practices, MSc Thesis, Nov. 2016 [bibTex]
- Alexey Mazalov advised by Bruno Martins and David Martins de Matos, Understanding Spatial Semantics in Natural Language, MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, Nov. 2016 [bibTex]
- Cátia Alexandre Bento Almeirão advised by Miguel Mira da Silva and Daniel Jorge Viegas Gonçalves, Gamification in Business Process Management, MSc Thesis, Oct. 2016 [bibTex]
- Jessica Filipa Assis Alves Ribeiro advised by Miguel Mira da Silva and Daniel Jorge Viegas Gonçalves, Gamification in Enterprise Mobile Applications, MSc Thesis, Oct. 2016 [bibTex]
- José Jorge Marcos Raposo advised by David Martins de Matos and Bruno Martins, Open Information Extraction in Spoken Dialogue, MSc Thesis, Oct. 2016 [bibTex]
- Joana Alexandra Pimenta Gomes advised by Pável Calado, Biological Information Extraction from Scientific Papers, MSc Thesis at Instituto Superior Técnico, Sep. 2016 [bibTex]
- Jorge Miguel Lopes Branco de Oliveira advised by Pável Calado and Bruno Martins, Event Recommendation Engine, MSc Thesis, Sep. 2016 [bibTex]
- João Carlos Duarte Santos Oliveira Violante advised by Pável Calado, Sentiment Analysis on Movie Reviews, MSc Thesis, Sep. 2016 [bibTex]
- Inês Coimbra Sousa Castelo advised by Alberto Rodrigues da Silva, BOAv3/DashVis: Visualization Dashboard applied to Learning Objects Repository, MSc Thesis at IST, Jul. 2016 [bibTex]
- Luís Miguel Monteiro Silva advised by Helena Galhardas and João Damásio, ETL in the Age of Big Data , MSc Thesis, Jun. 2016 [bibTex]
- João Eduardo dos Reis Peres Seixas advised by Alberto Rodrigues da Silva, The XIS-Web Technology: A Model-Driven Development Approach for Responsive Web Applications, MSc Thesis, Jun. 2016 [bibTex]
- Afonso Vitorino Mangas Pereira da Silva advised by Alberto Rodrigues da Silva, XIS-Analytics: A Domain Specific Language for Data Analysis, MSc Thesis at IST/UL, Jun. 2016 [bibTex]
- Bruno Martins advised by J. Monteiro, Motor de Algoritmo Genético sobre GPUs, MSc Thesis at Instituto Superior Técnico, May. 2016 [bibTex]
- Vasco Pinto Ferreira advised by Bruno Martins and David Martins de Matos, Polinformatics and using textual transcript of parliamentary interventions for profiling Portuguese politicians, MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, May. 2016 [bibTex]
- Ana Rita da Costa Pereira advised by Sara C. Madeira, Predicting conversion from mild cognitive impairment to Alzheimer's Disease using ensemble learning, MSc Thesis, May. 2016 [bibTex]

Graduation Theses: 1

2016

- João Nuno Gonçalves Forja and Alexandre Teixeira de Almeida advised by José Simão and Cátia Vaz, NGS4Cloud: Cloud-based NGS Data Processing, Graduation Thesis at Instituto Superior de Engenharia de Lisboa, Sep. 2016 [bibTex]

as Editors

Edited Books: 1

2016

- David Pearce and H. Sofia Pinto, editors, STAIRS 2016 Proceedings of the 8th European Starting AI Researchers Symposium, Frontiers in Artificial Intelligence and Applications 284, Aug. 2016, IOS Press [bibTex]

Edited Proceedings: 1

2018

- Sérgio Guerreiro and Gulden, J., Reinhartz-Berger, I., Schmidt, R., Guédria, W., Bera, P., editors, Enterprise, Business-Process and Information Systems Modeling, LNBIP 318, Jun. 2018, Springer Verlag [bibTex]

Reports

Technical Reports: 11

2018

- Pradeeban Kathiravelu and Ashish Sharma and Helena Galhardas and Peter Van Roy and Luís Veiga, On-Demand Big Data Integration: A Hybrid ETL Approach for Reproducible Scientific Research, INESC-ID Tec. Rep. 3/2018, Apr. 2018 [bibTex]
- Nuno Miguel Antunes Freire and Valentine Charles and Antoine Isaac, Evaluation of Schema.org for Aggregation of Cultural Heritage Metadata, INESC-ID Tec. Rep. 1/2018, Jan. 2018 [bibTex] [PDF]

2017

- Ana Sara Silva Rodrigues da Costa and José Rui Figueira and José Borbinha, A Multiple Criteria Nominal Classification Method Based on the Concepts of Similarity and Dissimilarity, INESC-ID Tec. Rep. 7/2017, Aug. 2017 [bibTex] [PDF]
- Miguel E. Coimbra and A. P. Francisco and Luís Veiga, Gelly-Scheduling: Distributed Graph Processing for Network Service Placement, INESC-ID Tec. Rep. 4/2017, Feb. 2017 [bibTex]
- Ana Sara Silva Rodrigues da Costa and José Borbinha and José Rui Figueira, A Multiple Criteria Nominal Classification Method Based on the Concepts of Similarity and Dissimilarity, INESC-ID Tec. Rep. 1/2017, Jan. 2017 [bibTex] [PDF]

2016

- Miguel E. Coimbra and A. P. Francisco and Luís Veiga, Joint Map-Match Modeling of GPS Traces, INESC-ID Tec. Rep. 13/2016, Dec. 2016 [bibTex]
- Miguel E. Coimbra and A. P. Francisco and Luís Veiga, Scalability of Graph Clustering Methods with Distributed Systems, INESC-ID Tec. Rep. 14/2016, Dec. 2016 [bibTex]
- Miguel Carvalho Valente Esaguy Coimbra and A. P. Francisco and Luís Veiga, Study on Resource Efficiency of Distributed Graph Processing, INESC-ID Tec. Rep. 17/2016, Dec. 2016 [bibTex]
- Sérgio Esteves and Helena Galhardas and Luís Veiga, Smart Scheduling of Continuous Data-Intensive Workflows with Machine Learning Triggered Execution, INESC-ID Tec. Rep. 9/2016, Oct. 2016 [bibTex]
- Valéria Magalhães Pequeno and Vânia Maria Ponte Vidal and Tiago Vinuto, Towards Automatic Generation of R2R Mappings, INESC-ID Tec. Rep. 7/2016, Oct. 2016 [bibTex] [PDF]