INESC-ID   Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa
technology from seed
Inesc-ID Lisboa
Home / Knowledge Discovery and Bioinformatics / Publications  
-YEASTRACT (Yeast Search for Transcriptional Regulators And Consensus Tracking), a database of regulatory associations between transcription factors in Saccharomyces cerevisiae.
-CCRB typing, an online resource for Staphylococci ccrB sequence typing..
-DFDF, the data format description framework, a descriptive approach to data standardization..
-Comparing Partitions, an online tool for a quantitative evaluation cluster congruence..
-RISO a DNA motif discovery tool for complex motifs.
-MUSA a DNA motif discovery tool for simple and complex motifs.
-RPOLY a tool for the inference of haplotypes by pure parsimony.
-Entropic profiler a tool to extract and study conserved motifs in genomes.
-Biggests, a tool that supports biclustering analysis of time series gene expression data.
-CCC-biclustering, efficient algorithms for biclustering time series gene expression data.
-E-CCC-biclustering, efficient algorithms to identify genes with similar patterns in time series expression data.
-CSA, an efficient algorithm to find the correct rotation for a set of circular DNA genome sequences that are to be aligned.
-GCF, greedy community finding algorithm based on modularity maximization.
-goeBURST, a java implementation of the eBURST algorithm rules proposed by Feil et al., using a graphic matroid approach that ensures an optimal solution for the placement of links between Sequence Types.