INESC-ID   Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa
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-YEASTRACT (Yeast Search for Transcriptional Regulators And Consensus Tracking), a database of regulatory associations between transcription factors in Saccharomyces cerevisiae.
 
-CCRB typing, an online resource for Staphylococci ccrB sequence typing..
 
-DFDF, the data format description framework, a descriptive approach to data standardization..
 
-Comparing Partitions, an online tool for a quantitative evaluation cluster congruence..
 
-RISO a DNA motif discovery tool for complex motifs.
 
-MUSA a DNA motif discovery tool for simple and complex motifs.
 
-RPOLY a tool for the inference of haplotypes by pure parsimony.
 
-Entropic profiler a tool to extract and study conserved motifs in genomes.
 
-Biggests, a tool that supports biclustering analysis of time series gene expression data.
 
-CCC-biclustering, efficient algorithms for biclustering time series gene expression data.
 
-E-CCC-biclustering, efficient algorithms to identify genes with similar patterns in time series expression data.
 
-CSA, an efficient algorithm to find the correct rotation for a set of circular DNA genome sequences that are to be aligned.
 
-GCF, greedy community finding algorithm based on modularity maximization.
 
-goeBURST, a java implementation of the eBURST algorithm rules proposed by Feil et al., using a graphic matroid approach that ensures an optimal solution for the placement of links between Sequence Types.