Publications

Books

Book Chapters: 3

2019

- Sergio Santander-Jiménez and Miguel A. Vega-Rodríguez and Leonel Sousa, Analysis of MOEA/D Approaches for Inferring Ancestral Relationships, chapter of Hybrid Artificial Intelligence Systems. LNAI Vol. 11734, Jun. 2019, Springer [bibTex]

2017

- Daniel Gallego-Sánchez and José M. Granado-Criado and Sergio Santander-Jiménez and Álvaro Rubio-Largo and Miguel A. Vega-Rodríguez, Parallel Multi-Objective Optimization for High-Order Epistasis Detection, chapter of Algorithms and Architectures for Parallel Processing, LNCS, Vol. 10393, Aug. 2017, Springer International Publish [bibTex]
- Sergio Santander-Jiménez and Miguel A. Vega-Rodríguez, Improving Multiobjective Phylogenetic Searches by Using a Parallel epsilon-Dominance Based Adaptation of the Firefly Algorithm, chapter of Euro-Par 2016: Parallel Processing Workshops, LNCS, Vol. 10104, May. 2017, Springer International Publish [bibTex]

Articles

International Journal Articles: 12

2019

- Belen Gonzalez-Sanchez and Miguel A. Vega-Rodríguez and Sergio Santander-Jiménez, Multi-objective Memetic Meta-heuristic Algorithm for Encoding the Same Protein with Multiple Genes, article in Expert Systems With Applications vol. 136 pp. 83-93, to appear on 2019, Pergamon-Elsevier Science [DOI Article link] [bibTex]
- Belen Gonzalez-Sanchez and Miguel A. Vega-Rodríguez and Sergio Santander-Jiménez, Multi-Objective Protein Encoding: Redefinition of the Problem, New Problem-aware Operators, and Approach based on Variable Neighborhood Search, article in Information Sciences vol. 500 pp. 173-189, to appear on 2019, Elsevier Science [DOI Article link] [bibTex]
- Miguel A. Vega-Rodríguez and Sergio Santander-Jiménez, Parallel Computing in Bioinformatics: A View from High-Performance, Heterogeneous, and Cloud Computing, article in Journal of Supercomputing vol. 75 (7) pp. 3369-3373, Jul. 2019, Springer [DOI Article link] [bibTex]
- Sergio Santander-Jiménez and Miguel A. Vega-Rodríguez and Leonel Sousa, A Multiobjective Adaptive Approach for the Inference of Evolutionary Relationships in Protein-Based Scenarios, article in Information Sciences vol. 485 (65) pp. 281-300, May. 2019, Elsevier Science [DOI Article link] [bibTex]
- Sergio Santander-Jiménez and Miguel A. Vega-Rodríguez and Jorge Vicente-Viola and Leonel Sousa, Comparative Assessment of GPGPU Technologies to Accelerate Objective Functions: A Case Study on Parsimony, article in Journal of Parallel and Distributed Computing vol. 126 pp. 67-81, Apr. 2019, Academic Press-Elsevier Science [DOI Article link] [bibTex]
- Sergio Santander-Jiménez and Miguel A. Vega-Rodríguez, Comparative Analysis of Intra-Algorithm Parallel Multiobjective Evolutionary Algorithms: Taxonomy Implications on Bioinformatics Scenarios, article in IEEE Transactions on Parallel and Distributed Systems vol. 30 (1) pp. 63-78, Jan. 2019, IEEE Computer Society [DOI Article link] [bibTex]
- Belen Gonzalez-Sanchez and Miguel A. Vega-Rodríguez and Sergio Santander-Jiménez and José M. Granado-Criado, Multi-Objective Artificial Bee Colony for Designing Multiple Genes Encoding the Same Protein, article in Applied Soft Computing vol. 74 pp. 90-98, Jan. 2019, Elsevier Science [DOI Article link] [bibTex]

2018

- Sergio Santander-Jiménez and Miguel Vega-Rodriguez and Leonel Sousa, Multiobjective Frog-Leaping Optimization for the Study of Ancestral Relationships in Protein Data, article in IEEE Transactions on Evolutionary Computation vol. 26 (6) pp. 879-893, Dec. 2018, IEEE [DOI Article link] [bibTex]

2017

- Sergio Santander-Jiménez and Miguel A. Vega-Rodríguez, Using Mixed Mode Programming to Parallelize an Indicator-Based Evolutionary Algorithm for Inferring Multiobjective Phylogenetic Histories, article in Soft Computing vol. 21 (19) pp. 1432-7643, Oct. 2017, Springer [DOI Article link] [bibTex]
- Miguel A. Vega-Rodríguez and Sergio Santander-Jiménez, Parallelism-based Approaches in Computational Biology: A View from Diverse Case Studies, article in Cluster Computing-The Journal of Networks Software Tools and Applications vol. 20 (3) pp. 1865-1867, Sep. 2017, Springer [DOI Article link] [bibTex]
- Sergio Santander-Jiménez and Miguel A. Vega-Rodríguez, Asynchronous Non-Generational Model to Parallelize Metaheuristics: A Bioinformatics Case Study, article in IEEE Transactions on Parallel and Distributed Systems vol. 28 (7) pp. 1825-1838, Jul. 2017, IEEE Computer Society [DOI Article link] [bibTex]
- Sergio Santander-Jiménez and Aleksandar Ilic and Leonel Sousa and Miguel A. Vega-Rodríguez, Accelerating the Phylogenetic Parsimony Function on Heterogeneous Systems, article in Concurrency and Computation: Practice and Experience vol. 29 (8) pp. 1-15, Apr. 2017, Wiley-Blackwell [DOI Article link] [bibTex]

International Conferences: 2

2018

- Sergio Santander-Jiménez and Miguel A. Vega-Rodríguez and Leonel Sousa, Phylogenetic Reconstructions Using an Indicator-Based Bat Algorithm for Multicore Processors, presented at IEEE International Conference on Bioinformatics and Biomedicine 2018 (IEEE BIBM 2018), Dec. 2018 [bibTex]
- Sergio Santander-Jiménez and Miguel A. Vega-Rodríguez and Leonel Sousa, Analysis of Scheduling Policies in Metaheuristics for Evolutionary Biology, presented at 6th International Workshop on Parallelism in Bioinformatics (PBio 2018), Sep. 2018 [DOI Article link] [bibTex]

as Editors

Edited Proceedings: 1

2018

- Miguel A. Vega-Rodríguez and Sergio Santander-Jiménez and José M. Granado-Criado and Rosa M. Badia , editors, Proceedings of the 6th International Workshop on Parallelism in Bioinformatics (PBio 2018), Sep. 2018, Association for Computing Mach [bibTex]

Special Issues of Journals (editor): 2

2019

- Miguel A. Vega-Rodríguez and Sergio Santander-Jiménez, editors, Special Issue on Parallel Computing in Bioinformatics, Journal of Supercomputing vol. 75 (7), Jul. 2019, Springer [bibTex]

2017

- Miguel A. Vega-Rodríguez and Sergio Santander-Jiménez, editors, Special Issue on Parallelism-based Approaches in Computational Biology, Cluster Computing-The Journal of Networks Software Tools and Applications vol. 20 (3), Sep. 2017, Springer [bibTex]