Publications
Filter Publications: 2016 - 2018
Books
Book Chapters: 1
2016
- Predicting Gene and Genomic Regulation in Saccharomyces cerevisiae, using the YEASTRACT Database: A Step By Step Guided Analysis, chapter of Yeast Functional Genomics: Methods and Protocols, Jan. 2016, Humana Press [bibTex]
, Articles
International Journal Articles: 3
2017
- Stable states of Boolean regulatory networks composed over hexagonal grids, article in Electronic Notes in Theoretical Computer Science, to appear on 2017 [bibTex]
, - The PathoYeastract database: an information system for the analysis of gene and genomic transcription regulation in pathogenic yeasts, article in Nucleic Acids Research vol. 45 pp. D597-D603, Jan. 2017 [DOI Article link] [bibTex]
, 2016
- Logical modeling and dynamical analysis of cellular networks, article in Frontiers in Genetics vol. 7 pp. 94, May. 2016 [DOI Article link] [bibTex]
, International Conferences: 6
2017
- Logic-Based Encodings for Ricochet Robots, presented at EPIA Conference on Artificial Intelligence (EPIA'17), Sep. 2017 [DOI Article link] [bibTex]
, - Using Spark and GraphX to Parallelize Large-Scale Simulations of Bacterial Populations over Host Contact Networks, presented at International Conference on Algorithms and Architectures for Parallel Processing (ICA3PP'17), Sep. 2017 [DOI Article link] [bibTex]
, - Using Spark and MapReduce to Parallelize Large Scale Simulations Over Host Contact Networks, Jul. 2017 [bibTex]
, 2016
- SAT-based identification of stable states in composed Boolean regulatory networks, presented at International Workshop on Static Analysis and Systems Biology (SASB 2016), Sep. 2016 [bibTex]
, - On the number and structure of Boolean functions compatible with a regulatory network topology, presented at [Abstract and Presentation at] 10th European Conference on Mathematical and Theoretical Biology (ECMTB), Jul. 2016 [bibTex]
, - Reversing Boolean gene regulatory networks, presented at [Abstract and oral presentation at] 10th European Conference on Mathematical and Theoretical Biology (ECMTB), Jul. 2016 [bibTex]
, Dissertations
MSc Theses: 2
2016
- Pedro T. Monteiro and Inês Lynce, Inference in Biological Regulatory Networks, MSc Thesis at Instituto Superior Técnico - Universidade de Lisboa, Sep. 2016 [bibTex]
advised by - Pedro T. Monteiro and Miguel Cacho Teixeira, Development of the PathoYeastract database: aiming the study of transcriptional regulation in pathogenic yeasts, MSc Thesis at Instituto Superior Técnico - Universidade de Lisboa, Jul. 2016 [bibTex]
advised by Reports
Technical Reports: 1
2016
- Repairing Boolean regulatory networks using Answer Set Programming, INESC-ID Tec. Rep. 5/2016, Jul. 2016 [bibTex] [PDF]
,