Publications

Books

Book Chapters: 4

2019

- Alberto Rodrigues da Silva and Ana C. R. Paiva and Valter E. R. da Silva, A Test Specification Language for Information Systems based on Data Entities, Use Cases and State Machines, chapter of Model-Driven Engineering and Software Development, Jan. 2019, Springer [bibTex]

2018

- André Reis and Alberto Rodrigues da Silva, Evaluation of XIS-Reverse, a Model-Driven Reverse Engineering Approach for Legacy Information Systems, chapter of Model-Driven Engineering and Software Development, Jul. 2018, Springer [bibTex]
- Sérgio Guerreiro, Informed Decision-Making with Enterprise Dynamic Systems Control, Systems and Software Engineering, chapter of Encyclopedia of Information Science and Technology, Jan. 2018, IGI Global [bibTex]
- Sérgio Guerreiro, Challenges of Meta Access Control Model Enforcement to an Increased Interoperability, chapter of Encyclopedia of Information Science and Technology, fourth edition, Systems and Software Engineering, Jan. 2018, IGI Global [bibTex]

Articles

International Journal Articles: 20

2019

- Rafael Alexandre da Silva Marques and Luís M. S. Russo and Nuno Roma, Flying Tourist Problem: Flight Time and Cost Minimization in Complex Routes, article in Expert Systems with Applications vol. 130 pp. 172 - 187, Sep. 2019, Elsevier [bibTex] [PDF]
- Pradeeban Kathiravelu and Ashish Sharma and Helena Galhardas and Peter Van Roy and Luís Veiga, On-demand big data integration, article in Distributed and Parallel Databases vol. 37 (2) pp. 273–295, Jun. 2019, Springer [DOI Article link] [bibTex]
- Tiago de Melo and Altigran S. da Silva and Edleno S. de Moura and Pável Calado, OpinionLink: Leveraging user opinions for product catalog enrichment, article in Information Processing & Management vol. 56 (3) pp. 823–843, May. 2019 [bibTex]
- João Caramujo and Alberto Rodrigues da Silva and Shaghayegh Monfared and André Ribeiro and Travis Breaux and Pável Calado, RSL- IL4Privacy: a domain-specific language for the rigorous specification of privacy policies, article in Requirements Engineering vol. 24 (1) pp. 1--26, May. 2019 [bibTex]
- Luís Borges and Bruno Martins and Pável Calado, Combining similarity features and deep representation learning for stance detection in the context of checking fake news, article in ACM Journal of Data and Information Quality vol. 9 (39), Apr. 2019 [bibTex]
- João Caramujo and Alberto Rodrigues da Silva and Sharareh Moghadam Monfared and André Ribeiro and Pável Calado and Travis Breaux, RSL-IL4Privacy: A Domain-Specific Language for the Specification of Privacy-Aware Requirements, article in Requirements Engineering vol. 24 (1), Jan. 2019, Springer [DOI Article link] [bibTex]

2018

- Diogo Miguel Barrinha Barradas and Tiago Brito and David José Nunes Duarte and Nuno Miguel Pereira dos Santos and Luis Rodrigues, Forensic Analysis of Communication Records of Messaging Applications from Physical Memory, article in Computers & Security, to appear on 2018, Elsevier [DOI Article link] [bibTex]
- Andreia Teixeira and Francisco Fernandes and A. P. Francisco, SpliceTAPyR - An Efficient Method For Transcriptome Alignment, article in International Journal of Foundations of Computer Science vol. 29 (8) pp. 1297-1310, Dec. 2018, World Scientific Publishing Co [Article] [DOI Article link] [bibTex] [PDF]
- Diogo Miguel Barrinha Barradas and Tiago Brito and David Duarte and Nuno Santos and Luis Rodrigues, Forensic Analysis of Communication Records of Web-based Messaging Applications from Physical Memory, article in Computer & Security, Oct. 2018, Elsevier [bibTex]
- Nuno D. Mendes and Rui Miguel Carrasqueiro Henriques and Elisabeth Remy and Jorge Carneiro and Pedro T. Monteiro and Claudine Chaouiya, Estimating attractor reachability in asynchronous logical models, article in Frontiers in Physiology vol. 9 pp. 1161, Jul. 2018 [DOI Article link] [bibTex]
- Rui Miguel Carrasqueiro Henriques and Sara C. Madeira, Triclustering Algorithms for Three-Dimensional Data Analysis: A Comprehensive Survey, article in ACM Computing Surveys (CSUR) vol. 51 pp. 1-43, Jun. 2018 [DOI Article link] [bibTex]
- Paulo Jorge Fernandes Carreira and António Aguiar Costa and Vitor Mansur and Artur A. Arsénio, Can HVAC really learn from users? A simulation-based study on the effectiveness of voting for comfort and energy use optimisation, article in Sustainable Cities and Society, May. 2018, Elsevier [Article] [DOI Article link] [bibTex] [PDF]
- Andreia Teixeira and Pedro T. Monteiro and João A. Carriço and Francisco C. Santos and A. P. Francisco, Large-Scale Simulations of Bacterial Populations over Complex Networks, article in Journal of Computational Biology, May. 2018 [bibTex]
- Francisco Miguel Caramelo Duarte and Bruno Martins and Cátia Sousa Pinto and Mário J. Silva, Deep neural models for ICD-10 coding of death certificates and autopsy reports in free-text, article in Journal of Biomedical Informatics vol. 80 pp. 64-77, Apr. 2018, Elsevier [Article] [DOI Article link] [bibTex]
- Luís M. S. Russo and Andreia Teixeira and A. P. Francisco, Linking and Cutting Spanning Trees, article in Algorithms vol. 11 (4) pp. 53, Apr. 2018, MDPI [DOI Article link] [bibTex]
- Miguel Monteiro and Ana Catarina Fonseca and Ana T. Freitas and Teresa Pinho e Melo and A. P. Francisco and José M. Ferro and Arlindo L. Oliveira, Using Machine Learning to Improve the Prediction of Functional Outcome in Ischemic Stroke Patients, article in ACM/IEEE Transactions cn Computational Biology and Bioinformatics vol. 15 (6) pp. 1953-1959, Mar. 2018 [DOI Article link] [bibTex] [PDF]
- João Carriço and Maxime Crochemore and A. P. Francisco and Solon Pissis and Bruno Ribeiro‑Gonçalves and Cátia Vaz, Fast phylogenetic inference from typing data, article in Algorithms for Molecular Biology vol. 13 (4), Feb. 2018, BioMed Central [DOI Article link] [bibTex]
- Luís Moreira de Sousa and Alberto Rodrigues da Silva, Usability Evaluation of the Domain Specific Language for Spatial Simulation Scenarios, article in Cogent Engineering vol. 5 (1), Feb. 2018, Cogent [DOI Article link] [bibTex]
- Sérgio Guerreiro, Using Markov Theory to Deliver Informed Decisions in Partially Observable Business Processes Operation, article in International Journal of Operations Research and Information Systems (IJORIS) vol. 9 (2) pp. 53--72, Jan. 2018, IGI Global [DOI Article link] [bibTex]

International Conferences: 26

2019

- João Eduardo dos Reis Peres Seixas and André Filipe Oliveira Pinto Ribeiro and Alberto Rodrigues da Silva, A Model-Driven Approach for Developing Responsive Web Apps, presented at ENASE’2019, May. 2019 [bibTex]
- Rui Abreu and Sofia Oliveira Reis and Marcelo D'Amorim, Demystifying the Combination of Dynamic Slicing and Spectrum-based Fault Localization, presented at 28th International Joint Conference on Artificial Intelligence (IJCAI19), May. 2019 [bibTex] [PDF]
- Daniel Maciel and Ana C. R. Paiva and Alberto Rodrigues da Silva, From Requirements to Automated Acceptance Tests of Interactive Apps: An Integrated Model-based Testing Approach, presented at ENASE’2019, May. 2019 [bibTex]
- Ambrósio Soares and Paula Cristina Negrão Ventura Martins and Alberto Rodrigues da Silva, LegalLanguage: a Domain-Specific Language for Legal Contexts and its Application in Production Processes, presented at EEWC’2019, May. 2019 [bibTex]
- Rui Miguel Carrasqueiro Henriques and Anna Carolina Nametala Finamore do Couto and Marco Antonio Casanova, On the Discovery of Educational Patterns using Biclustering, presented at 15th International Conference on Intelligent Tutoring Systems (ITS), May. 2019 [bibTex]
- Anna Carolina Nametala Finamore do Couto and Marco Antonio Casanova, On the Discovery of Educational Patterns using Biclustering, presented at 15th International Conference on Intelligent Tutoring Systems (ITS), May. 2019 [bibTex]
- Tiago de Melo and Altigran S. da Silva and Edleno S. de Moura and Pável Calado, The importance of canonical product attributes on user opinions: an empirical investigation, presented at 10th Latin American Web Congress (LA-WEB 2019), May. 2019 [bibTex]

2018

- Sérgio Esteves and Helena Galhardas and Luís Veiga, Adaptive Execution of Continuous and Data-intensive Workflows with Machine Learning, presented at Middleware, Dec. 2018 [bibTex]
- Miguel Monteiro and Mário A. T. Figueiredo and Arlindo L. Oliveira, Conditional Random Fields as Recurrent Neural Networks for 3D Medical Imaging Segmentation, presented at Medical Imaging meets NeurIPS Workshop, Dec. 2018 [bibTex] [PDF]
- Danielle Caled and Mário J. Silva, FTR-18: Collecting rumours on football transfer news, presented at 2nd International Workshop on Rumours and Deception in Social Media (RDSM), Nov. 2018 [bibTex] [PDF]
- Pedro Miguel Cecílio Lopes and Alberto Rodrigues da Silva, A Collaborative Platform for Better Managing Technical Documentation: An analysis from a Requirements Engineering Perspective, presented at QUATIC’2018, Sep. 2018 [bibTex]
- Rui Policarpo Duarte and Rui Miguel Carrasqueiro Henriques and Horácio C. Neto, FPGA-based OpenCL Accelerator for Discovering Temporal Patterns in Gene Expression Data Using Biclustering', presented at PBio 2018 Proceedings of the 6th International Workshop on Parallelism in Bioinformatics , Sep. 2018 [DOI Article link] [bibTex]
- Camille Chanial and Rédouane Dziri and Helena Galhardas and Julien Leblay and Minh-Huong Le Nguyen and Ioana Manolescu, ConnectionLens: Finding Connections Across Heterogeneous Data Sources (demo), presented at International Conference on Very Large Databases (VLDB), Aug. 2018 [bibTex]
- Luís Carlos Pissarra Gonçalves and Alberto Rodrigues da Silva, Towards a Catalogue of Reusable Security Requirements, Risks and Vulnerabilities, presented at International Conference on Information Systems Development (ISD'2018), Aug. 2018 [bibTex]
- Luís Carlos Pissarra Gonçalves and Alberto Rodrigues da Silva, A Catalogue of Reusable Security Concerns: Focus on Privacy Threats, presented at IEEE Conference on Business Informatics'2018, Jul. 2018 [bibTex]
- Hugo Rosa and Joao P. Carvalho and Pável Calado and Bruno Martins and Luísa Coheur and Ricardo Ribeiro, Using Fuzzy Fingerprints for Cyberbullying Detection in Social Networks, presented at 2018 IEEE International Conference on Fuzzy Systems (FUZZ-IEEE), Jul. 2018 [bibTex] [PDF]
- Sérgio Guerreiro and Miguens, J., Mira da Silva, M., A Viewpoint for Representing Costs in Enterprise Architectures, presented at 20th IEEE Conference on Business Informatics, Jun. 2018 [bibTex]
- Nuno Freire and Bruno Martins and Pável Calado, Availability of cultural heritage structured metadata in the world wide web, presented at 22nd International Conference on Electronic Publishing, Jun. 2018 [bibTex]
- Sérgio Guerreiro and Silva, D., Sousa, P., Conceptualizing DEMO business transactions with Blockchain Hyperledger Composer to enable Traceability and Control, presented at EEWC, Jun. 2018 [bibTex]
- Rui Miguel Carrasqueiro Henriques and Sara C. Madeira, Order-preserving Pattern Matching Indeterminate Strings, presented at Symposium on Combinatorial Pattern Matching (CPM), Jun. 2018 [bibTex]
- Sandra Lagarto and Anabela Delgado and Rui Silva and Lufialuiso Sampaio and Mário J. Silva and Pável Calado, Record linkage methods for administrative data: The portuguese census transformation program, presented at 2018 European Conference on Quality in Official Statistics, Jun. 2018 [bibTex]
- André Carvalho and Pável Calado and Joao P. Carvalho, Tag-Based User Fuzzy Fingerprints for Recommender Systems, presented at IPMU2018 - 17th International Conference on Information Processing and Management of Uncertainty in Knowledge-Based Systems, Jun. 2018 [bibTex] [PDF]
- João Manuel Policarpo Moreira and Helena Galhardas and Miguel Pardal, LeanBench: comparing software stacks for batch and query processing of IoT data, presented at International Conference on Ambient Systems, Networks and Technologies (ANT), May. 2018 [bibTex]
- Alberto Rodrigues da Silva and João Pedro Nunes da Costa Fernandes, Semiautomated Approach to the Specification and Resolution of Variability in Textual Requirements, presented at ICEIS'2018, Apr. 2018 [bibTex]
- Mário António Fernandes and Alberto Rodrigues da Silva and António José da Costa Gonçalves, Specification of Personal Data Protection Requirements: Interpretation of Legal Requirements from the GDPR, presented at ICEIS'2018, Apr. 2018 [bibTex]
- Alberto Rodrigues da Silva and Ana C. R. Paiva and Valter Emanuel R. da Silva, Towards a Test Specification Language for Information Systems: Focus on Data Entity and State Machine Tests, presented at MODELSWARD’2018, Feb. 2018 [bibTex]

National Conferences: 2

2018

- Maria João Albuquerque and H. Sofia Pinto and José Borbinha, A Heterogeneidade na Representação da Informação Musical : Proposta de uma Ontologia para a Música, presented at 13º Congresso BAD, Oct. 2018 [bibTex]
- Ambrósio Alves Soares and Paula Cristina Negrão Ventura Martins and Alberto Rodrigues da Silva, Revisão Sistemática da Literatura sobre Ontologias Legais, presented at Conferência da Associação Portuguesa de Sistemas de Informação (CAPSI'2018), Sep. 2018 [bibTex]

Dissertations

PhD Theses: 3

2018

- Baojiang Yang advised by Mário J. Silva, Essays in telecomunnication policy, PhD Thesis, May. 2018 [bibTex]
- Jorge dos Santos Oliveira and Ana T. Freitas and Lucymara Agnez-Lima advised by Ana T. Freitas and Lucymara Agnez-Lima, Prospecção de genes aplicados à biodegradação de hidrocarbonetos e produção de surfactantes utilizando abordagens computacionais, PhD Thesis at Universidade Federal do Rio Grande do Norte - Brasil, Apr. 2018 [bibTex]
- Silvio Moreira advised by Mário J. Silva and Paula Carvalho, Agile Social Media Analysis with Neural Networks, PhD Thesis at IST, Jan. 2018 [bibTex] [PDF]

MSc Theses: 17

2019

- Luis Carlos de Almeida Espirito Santo advised by H. Sofia Pinto and David Martins de Matos, Automatically Generating Novel and Epic Music Tracks; Exploring Computational Creativity using Deep Structures against Music, MSc Thesis, Jun. 2019 [bibTex]
- Duarte Pompeu advised by Bruno Martins and David Martins de Matos, Interpretable Deep Learning Methods for Classifying Folktales According to the Aarne-Thompson-Uther Scheme, MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, Jun. 2019 [bibTex]

2018

- Fernando Liça advised by Pável Calado, Census Optimization Using Machine Learning Techniques, MSc Thesis, Dec. 2018 [bibTex]
- Filipe Santos Nobre da Costa advised by Helena Galhardas and João Carlos Serrenho Dias Pereira, Physician-friendly predictive model: application to vasopressors administration and mechanical ventilation prediction, MSc Thesis at Instituto Superior Técnico, Univ. de Lisboa, Dec. 2018 [bibTex]
- Ricardo José Ribeiro Pereira advised by Pável Calado, “Big data meets nature conservation”: Ferramentas automáticas para extracção de informação relevante para a conservação da biodiversidade, MSc Thesis, Dec. 2018 [bibTex]
- Magda Carolina Araújo Resende advised by Helena Galhardas and Inês Lynce, DeepSea: Web-based database, MSc Thesis at Instituto Superior Técnico, Univ. de Lisboa, Nov. 2018 [bibTex]
- Fernando Jorge Vicente Marçal Liça advised by Pável Calado and Mário J. Silva, Census Optimization Using Machine Learning Techniques, MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, Oct. 2018 [bibTex]
- Sebastião Salema Cordeiro Aboim de Barros advised by Mário J. Silva and Francisca Leite, Conformance Checking for Care Pathway Compliance Assessment, MSc Thesis, Oct. 2018 [bibTex]
- Henrique da Nave Cândido Ferrão Carlos advised by H. Sofia Pinto and Francisco S. Melo, Creating Recipes using Machine Learning and Computational Creativity , MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, Oct. 2018 [bibTex]
- Rafael Alexandre Pires de Miranda advised by Bruno Martins and Mário J. Silva, Deep Learning for Multi-Label ICD-10 Classification of Hospital Discharge Summaries, MSc Thesis, Oct. 2018 [bibTex]
- Filipe Flores Monteiro advised by Bruno Martins and Mário J. Silva, Predicting Restaurant Inspection Scores Based on Yelp Data and Sanitary Inspection Reports, MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, Oct. 2018 [bibTex]
- Jorge Miguel Tavares Veiga advised by Alberto Rodrigues da Silva, Rigorous Project Plans with the ITLingo PSL Excel Template, MSc Thesis at IST, Oct. 2018 [bibTex]
- Luís Carlos Pissarra Gonçalves advised by Alberto Rodrigues da Silva, RSLingo4Cybersecurity: Rigorous and Reusable Requirements Catalogue in Cybersecurity Domain, MSc Thesis at IST, Oct. 2018 [bibTex]
- Mário António Fernandes advised by Alberto Rodrigues da Silva, Catálogo de Requisitos de Segurança Alinhados com o Regulamento Geral de Proteção de Dados Pessoais (UE) 2016/679, MSc Thesis at IST, Jun. 2018 [bibTex]
- Miguel Felicio Raposo Vieira advised by Mário J. Silva and Bruno Martins, EpiMass: A Clinical and Epidemiological Platform for Mass Gatherings, MSc Thesis, Jun. 2018 [bibTex]
- André Ricardo Anselmo Félix advised by Luísa Coheur and Pável Calado, Watson contra o Mundo, MSc Thesis, Jun. 2018 [bibTex]
- Jorge Simão Madeira Cordeiro de Aragão Goulart advised by Helena Galhardas and João Carlos Serrenho Dias Pereira, Sistema de Gestão de Informação do IPFN: Gestão de Recursos Humanos e Suporte Informático, MSc Thesis at Instituto Superior Técnico, Univ. de Lisboa, Apr. 2018 [bibTex]

Internships: 1

2018

- João Francisco Lopes Pirralha advised by Helena Galhardas, U Medicine, short term traineeship, May. 2018 [bibTex]

as Editors

Edited Proceedings: 2

2019

- Melanie Herschel and Helena Galhardas and Berthold Reinwald and Irini Fundulaki and Carsten Binnig and Zoi Kaoudi and Zoi Kaoudi, editors, Advances in Database Technology - 22nd International Conference on Extending Database Technology (EDBT 2019), Mar. 2019, OpenProceedings.org [bibTex]

2018

- Sérgio Guerreiro and Gulden, J., Reinhartz-Berger, I., Schmidt, R., Guédria, W., Bera, P., editors, Enterprise, Business-Process and Information Systems Modeling, LNBIP 318, Jun. 2018, Springer Verlag [bibTex]

Reports

Technical Reports: 4

2019

2018

- Ana Sara Silva Rodrigues da Costa and Salvatore Corrente and Salvatore Greco and José Rui Figueira and José Borbinha, A robust hierarchical nominal classification method based on similarity and dissimilarity, INESC-ID Tec. Rep. 5/2018, Nov. 2018 [bibTex] [PDF]
- Pradeeban Kathiravelu and Ashish Sharma and Helena Galhardas and Peter Van Roy and Luís Veiga, On-Demand Big Data Integration: A Hybrid ETL Approach for Reproducible Scientific Research, INESC-ID Tec. Rep. 3/2018, Apr. 2018 [bibTex]
- Nuno Miguel Antunes Freire and Valentine Charles and Antoine Isaac, Evaluation of Schema.org for Aggregation of Cultural Heritage Metadata, INESC-ID Tec. Rep. 1/2018, Jan. 2018 [bibTex] [PDF]