Publications

Books

Book Chapters: 3

2020

- Ana C. R. Paiva and , Daniel Maciel and Alberto Rodrigues da Silva, From Requirements to Automated Acceptance Tests with the RSL Language , chapter of Communications in Computer and Information Science, vol 1172, Jan. 2020, Springer [bibTex]
- Tiago Rosado and André Ferreira Ferrão Couto e Vasconcelos and Miguel Correia, A Blockchain Use Case for Car Registration, chapter of Essentials of Blockchain Technology, Jan. 2020, CRC Press [bibTex]
- Sérgio Guerreiro, On Ontology of Integration Between Access Control and Business Process Deep Structure, chapter of Novel Approaches to Information Systems Design, Jan. 2020, IGI Global [bibTex]

Articles

International Journal Articles: 41

2021

- Cláudia S. Constantino and Alexandra M. Carvalho and Susana Vinga, Coupling sparse Cox models with clustering of longitudinal transcriptomics data for trauma prognosis, article in BioData Mining, to appear on 2021 [bibTex]
- Leonardo Duarte Rodrigues Alexandre and Rafael Costa and Lúcio Lara Santos and Rui Miguel Carrasqueiro Henriques, Mining pre-surgical patterns able to discriminate post-surgical outcomes in the oncological domain, article in IEEE Journal of Biomedical and Health Informatics, to appear on 2021, IEEE EMBS [bibTex]
- Daniel Mateus Gonçalves and Rui Miguel Carrasqueiro Henriques and Lucio Santos and Rafael Costa, On the predictability of postoperative complications for cancer patients: a Portuguese cohort study, article in BMC Medical Informatics and Decision Making, to appear on 2021 [bibTex]
- Daniel Mateus Gonçalves and Rui Miguel Carrasqueiro Henriques and Rafael Costa, Predicting postoperative complications in cancer patients: A survey bridging classical and machine learning contributions to postsurgical risk analysis, article in Cancers, MDPI, to appear on 2021 [bibTex]
- Andreia Sofia Teixeira and Szymon Talaga and Trevor James Swanson and Massimo Stella, Revealing semantic and emotional structure of suicide notes with cognitive network science, article in Scientific Reports, to appear on 2021 [bibTex]
- Rui Carvalho and Alberto Rodrigues da Silva, Sustainability Requirements of Digital Twin-Based Systems: A Meta Systematic Literature Review, article in Applied Sciences vol. 11 (5519), to appear on 2021, MDPI [DOI Article link] [bibTex]
- Alberto Rodrigues da Silva, Linguistic Patterns, Styles, and Guidelines for Writing Requirements Specifications: Focus on Use Cases and Scenarios, article in IEEE Access pp. 26, Oct. 2021, IEEE [bibTex]
- Leonardo Duarte Rodrigues Alexandre and Rafael Costa and Rui Miguel Carrasqueiro Henriques, DI2: prior-free and multi-item discretization of biological data and its applications, article in BMC Bioinformatics, Sep. 2021 [bibTex]
- J P Neto and I Alho and L Costa and S Casimiro and D Valério and Susana Vinga, Dynamic modeling of bone remodeling, osteolytic metastasis and PK/PD therapy: introducing variable order derivatives as a simplification technique, article in , Sep. 2021 [DOI Article link] [bibTex]
- Anabela Barreiro and Cristina Mota and Jorge Baptista and Lucília Chacoto and Paula Carvalho, Linguistic Resources for Paraphrase Generation in Portuguese: A Lexicon-Grammar Approach, article in Language Resources and Evaluation, Sep. 2021, Springer International Publishing [bibTex] [PDF]
- Susana Chambel Gonçalves Correia Gomes and Susana Vinga and Rui Miguel Carrasqueiro Henriques, Spatiotemporal Correlation Feature Spaces to support Anomaly Detection in Water Distribution Networks, article in Water, Sep. 2021, MDPI [bibTex]
- Angelos Christos Anadiotis and Oana Balalau and Catarina Conceição and Helena Galhardas and Mhd Yamen Haddad and Ioana Manolescu and Tayeb Merabti and Jingmao You, Graph integration of structured, semistructured and unstructured data for data journalism, article in Information Systems, Jul. 2021, Elsevier [bibTex]
- João Tiago Aparicio da Costa and Elisabete Arsénio and Rui Miguel Carrasqueiro Henriques, Understanding the impacts of the COVID-19 pandemic on public transportation travel patterns in the city of Lisbon, article in Sustainability, Jul. 2021, MDPI [bibTex]
- Rafael André Pestana Belchior and André Ferreira Ferrão Couto e Vasconcelos and Sérgio Guerreiro and Miguel Correia, A Survey on Blockchain Interoperability: Past, Present, and Future Trends, article in ACM Computing Surveys, Jun. 2021, ACM [bibTex]
- Miguel E. Coimbra and A. P. Francisco and Luís Veiga, An analysis of the graph processing landscape, article in Journal of Big Data vol. 8 (55), Apr. 2021, Springer [DOI Article link] [bibTex]
- Alberto Rodrigues da Silva and Dušan Savić, Linguistic Patterns and Linguistic Styles for Requirements Specification: Focus on Data Entities, article in Applied Sciences vol. 11 (9) pp. 34, Apr. 2021, MDPI [DOI Article link] [bibTex]
- Rafaela C. Cruz and Pedro Reis Costa and Susana Vinga and Ludwig Krippahl and Marta Lopes, A Review of Recent Machine Learning Advances for Forecasting Harmful Algal Blooms and Shellfish Contamination, article in Journal of Marine Science and Engineering vol. 9 (3) pp. 283, Mar. 2021 [DOI Article link] [bibTex]
- André Patrício and Rafael Costa and Rui Miguel Carrasqueiro Henriques, COVID-19 in Portugal: predictability of hospitalization, ICU and respiratory-assistance needs, article in Journal of Medical Internet Research (JMIR, https://www.jmir.org), Mar. 2021 [bibTex]
- Marta Lopes and Eduarda P. Martins and Susana Vinga and Bruno M. Costa, The Role of Network Science in Glioblastoma, article in Cancers vol. 13 (5) pp. 1045, Mar. 2021 [DOI Article link] [bibTex]
- Rui Miguel Carrasqueiro Henriques and Sara C. Madeira, FleBiC: Learning classifiers from high-dimensional biomedical data using discriminative biclusters with non-constant patterns, article in Pattern Recognition, Feb. 2021, Elsevier [bibTex]
- Olaf Sporns and Joshua Faskowitz and Andreia Sofia Teixeira and Sarah A. Cutts and Richard F. Betzel, Dynamic Expression of Brain Functional Systems Disclosed by Fine-Scale Analysis of Edge Time Series, article in Network Neuroscience, Jan. 2021 [DOI Article link] [bibTex]
- João Lobo and Rui Miguel Carrasqueiro Henriques and Sara C. Madeira, G-Tric: generating three-way synthetic datasets with triclustering solutions, article in BMC Bioinformatics, Jan. 2021 [Article] [bibTex]
- Francisco Miguel Consciência Neves and Anna Carolina Nametala Finamore do Couto and Sara C. Madeira and Rui Miguel Carrasqueiro Henriques, Mining actionable patterns of road mobility from heterogeneous traffic data using biclustering, article in IEEE Transactions on Intelligent Transportation Systems, Jan. 2021, IEEE [bibTex]

2020

- Jorge Pereira and João Miguel Cordeiro Monteiro and Joel Silva and Jacinto Estima and Bruno Martins, Assessing Flood Severity from Crowdsourced Social Media Photos with Deep Neural Networks, article in Multimedia Tools and Applications, to appear on 2020, Springer Netherlands [bibTex] [PDF]
- Sérgio Guerreiro, Conceptualizing on dynamically stable business processes operation: a literature review on existing concepts, article in Business Process Management Journal vol. 27 (1) pp. 24-54, to appear on 2020, Emerald [DOI Article link] [bibTex] [PDF]
- Sérgio Guerreiro and Diogo Silva and Tiago Rosado and André Ferreira Ferrão Couto e Vasconcelos and Miguel Correia and Pedro Manuel Moreira Vaz Antunes de Sousa, Decentralized Business Process Control using Blockchain - An experience report from two applications: Food Supply Chain and Car Registration, article in Enterprise Modelling and Information Systems Architectures vol. 15, to appear on 2020 [bibTex]
- Cátia Vaz and Marta Alexandra Fragoso Nascimento and João Carriço and Tatiana Rocher and A. P. Francisco, Distance-based phylogenetic inference from typing data: a unifying view, article in Briefings in Bioinformatics, to appear on 2020, Oxford University Press [DOI Article link] [bibTex]
- Anabela Barreiro and Cristina Mota and Jorge Baptista and Paula Carvalho, Recursos Linguísticos para a Geração de Paráfrases em Português, article in Linguamática vol. 12 (2), Dec. 2020, Universidade do Minho and Universidade de Vigo [bibTex]
- Jacinto Estima and Bruno Martins and João Miguel Cordeiro Monteiro and Joel Silva and Maria Dias, Semantic segmentation and colorization of grayscale aerial imagery with W‐Net models, article in Expert Systems vol. 37 (6), Dec. 2020, Wiley-Blackwell Publishing Ltd [DOI Article link] [bibTex]
- Luís M. S. Russo and Tobias Dietz and Jos'e~Rui Figueira and A. P. Francisco and Stefan Ruzika, Sparsifying Parity-Check Matrices, article in Applied Soft Computing, to appear on 2020, Elsevier BV [bibTex] [PDF]
- Carolina Peixoto and Marta Lopes and M Martins and L Costa and Susana Vinga, TCox: Correlation-Based Regularization Applied to Colorectal Cancer Survival Data, article in Biomedicines vol. 8 (11), Nov. 2020 [DOI Article link] [bibTex]
- Eugénio Ribeiro and Andreia Sofia Teixeira and Ricardo Ribeiro and David Martins de Matos, Semantic frame induction through the detection of communities of verbs and their arguments, article in Applied Network Science vol. 5, Sep. 2020, Springer [Article] [DOI Article link] [bibTex]
- R Miranda and Susana Vinga and D Valério, Studying Bone Remodelling and Tumour Growth for Therapy Predictive Control, article in Mathematics vol. 8, May. 2020 [DOI Article link] [bibTex]
- Sheila Da N. Silva and Edleno S. De Moura and Pável Calado, Effective lightweight learning-to-rank method using unified term impacts, article in IEEE Access vol. 8 pp. 70420--70437, Apr. 2020 [DOI Article link] [bibTex]
- Mariana Rebelo Dias and João Boné and João Ferreira and Ricardo Ribeiro and Rui Filipe Pedroso Maia, Named entity recognition for sensitive data discovery in Portuguese, article in Applied Sciences vol. 10 (7), Mar. 2020, MDPI [Article] [DOI Article link] [bibTex]
- David António Cóias Calhas and Enrique Romero and Rui Miguel Carrasqueiro Henriques, On the use of Pairwise Distance Learning for Brain Signal Classification with Limited Observations, article in Artificial Intelligence in Medicine, Mar. 2020, Elsevier [DOI Article link] [bibTex]
- R Andrade and M Doostmohammadi and JL Santos and MF Sagot and NP Mira and Susana Vinga, MOMO - multi-objective metabolic mixed integer optimization: application to yeast strain engineering, article in BMC Bioinformatics vol. 21 (1), Feb. 2020 [DOI Article link] [bibTex]
- Marta Lopes and Susana Vinga, Tracking intratumoral heterogeneity in glioblastoma via regularized classification of single-cell RNA-Seq data, article in BMC Bioinformatics vol. 21 (1), Feb. 2020 [DOI Article link] [bibTex]
- Sérgio Guerreiro, Decision-Making in Partially Known Business Process Environments using Markov Theory and Policy Graph Visualization, article in Int. J. of Business Information Systems, Jan. 2020 [DOI Article link] [bibTex]
- Sérgio Guerreiro and Pinheiro, C. and André Ferreira Ferrão Couto e Vasconcelos, Gestão da arquitetura empresarial na governação de microserviços, article in Revista Ibérica de Sistemas e Tecnologias de Informação (RISTI), Jan. 2020 [bibTex]

International Conferences: 54

2021

- Angelos Christos Anadiotis and Oana Balalau and Théo Bouganim and Francesco Chimienti and Helena Galhardas and M-Y Haddad and Stéphane Horel and Ioana Manolescu and Youssr Youssef, Discovering Conflicts of Interest across Heterogeneous Data Sources with ConnectionLens (demo paper), presented at ACM International Conference on Information and Knowledge Management (CIKM 2021), Nov. 2021 [bibTex]
- Ruxandra-Georgeta Barbulescu and Gonçalo Leote Cardoso Mestre and Arlindo L. Oliveira and L. Miguel Silveira, Using Recurrent Neural Networks to model the dynamic behaviour of the C. Elegans nervous system, presented at Champalimaud Research Symposium 2021, Oct. 2021 [bibTex]
- João Tiago Aparicio da Costa and Elisabete Arsenio and Rui Miguel Carrasqueiro Henriques, Assessing Robustness in Multimodal Transportation Systems: A case study in Lisbon, presented at European Transport Conference (ETC), Sep. 2021 [bibTex]
- Ana C. L. Gomes and Ana C. R. Paiva and Alberto Rodrigues da Silva, Generating Test Cases from Use Cases and Structured Scenarios: Experiences with the RSL Language, presented at International Conference on Information Systems Development'2021, Sep. 2021 [bibTex]
- Sofia Maria Pais Cerqueira and Elisabete Arsenio and Rui Miguel Carrasqueiro Henriques, Inference of Dynamic Origin-Destination Matrices with Trip and Transfer Status from Individual Smart Card Data, presented at European Transport Conference (ETC), Sep. 2021 [bibTex]
- Thomas Tiam-Lee and Rui Miguel Carrasqueiro Henriques, Where are the Passengers? Individual Passenger Route Choice Estimation from Gate Information in Urban Rail Transit Systems, presented at European Transport Conference (ETC), Sep. 2021 [bibTex]
- Alexandre João Gomes Borges and Arlindo L. Oliveira, Combining Off and On-Policy Training in Model-Based Reinforcement Learning, presented at Adaptive and Learning Agents @ AAMAS 2021, Jun. 2021 [bibTex]
- Andreia Sofia Teixeira and Francisco C. Santos and A. P. Francisco and Fernando Pedro Pascoal dos Santos, Eliciting Fairness in Multiplayer Bargaining through Network-based Role Assignment, presented at 20th International Conference on Autonomous Agents and Multiagent Systems (AAMAS 2021), May. 2021 [bibTex] [PDF]
- Sérgio Guerreiro and José Manuel Nunes Salvador Tribolet, Framing Enterprise Engineering within General System’s Theory: Perspectives of a Human Centered Future, presented at 10th Enterprise Engineering Working Conference (EEWC), Apr. 2021 [bibTex]
- Luis Ricardo dos Santos Aleixo and H. Sofia Pinto and Nuno Correia, From Music to Image, a Computational Creativity Approach, presented at Artificial Intelligence in Music, Sound, Art and Design. EvoMUSART, Apr. 2021 [DOI Article link] [bibTex]
- Francisco Manuel Alves Pereira Braga and H. Sofia Pinto, Sculpture Inspired Musical Composition, One Possible Approach, presented at Artificial Intelligence in Music, Sound, Art and Design. EvoMUSART, Apr. 2021 [DOI Article link] [bibTex]
- Leonor Pimenta de Oliveira e Silva and Helena Galhardas and Vasco Manquinho and Rui Miguel Carrasqueiro Henriques, UNIANO: robust and efficient anomaly consensus in time series sensitive to cross-correlated anomaly profiles, presented at SIAM International Conference on Data Mining, Apr. 2021 [bibTex]
- Sérgio Guerreiro and Marta Aparício and Pedro Manuel Moreira Vaz Antunes de Sousa, Decentralized Enforcement of DEMO Action Rules Using Blockchain Smart Contracts, presented at 10th Enterprise Engineering Working Conference (EEWC), Mar. 2021 [bibTex]
- Sérgio Guerreiro and Fernando Antunes, Integrating Benefits Dependency Network in ArchiMate, 10th Enterprise Engineering Working Conference (EEWC, Mar. 2021 [bibTex]
- João Lebre Pereira and Helena Galhardas and Dennis Shasha, Acronym Expander at SDU@AAAI-21: an Acronym Disambiguation Module, presented at Proceedings of the Workshop on Scientific Document Understanding co-located with 35th AAAI Conference on Artificial Intelligence (SDU@AAAI 2021), Feb. 2021 [bibTex]
- David António Cóias Calhas and Rui Miguel Carrasqueiro Henriques, fMRI Multiple Missing Values Imputation Regularized by a Recurrent Denoiser, presented at Artificial Intelligence in Medicine (AIME), Feb. 2021 [bibTex]
- Sérgio Guerreiro and M. Rosa and R. Pereira, Designing an IT Risk Management Ontology grounded on Systematic Literature Review, presented at Hawaii International Conference on System Sciences, Jan. 2021 [bibTex]
- Sérgio Guerreiro and V. Vasylkovskyi and João Sequeira, Designing and Validating a Blockchain-based Architecture to Enforce Privacy in Human Robot Interaction, presented at Hawaii International Conference on System Sciences, Jan. 2021 [bibTex]
- Sérgio Guerreiro and Marek Sktonica and Marta Aparício and Robert Pergl, Process Digitalization using Blockchain –EU Parliament Elections Case Study, presented at Proceedings of the 9th International Conference on Model-Driven Engineering and Software Development (MODELSWARD), Jan. 2021 [DOI Article link] [bibTex]

2020

- Andreia Sofia Teixeira and Szymon Talaga and Trevor James Swanson and Massimo Stella, Revealing semantic and emotional structure of suicide notes with cognitive network science, presented at Conference on Complex Systems 2020, Dec. 2020 [bibTex]
- Andreia Sofia Teixeira and Joshua Faskowitz and Olaf Sporns and Luis M. Rocha, The Metric Backbone in the Human Connectome, presented at The 9th International Conference on Complex Networks and their Applications, Dec. 2020 [bibTex]
- Sérgio Guerreiro and Pedro Manuel Moreira Vaz Antunes de Sousa and Aparício, M., Automated DEMO Action Model Implementation using Blockchain Smart Contracts,, presented at 12th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management,, Nov. 2020 [bibTex]
- Sérgio Guerreiro and Vasylkovskyi, V. and Sequeira, J., BlockRobot: Increasing Privacy in Human Robot Interaction by Using Blockchain, presented at IEEE Blockchain 2020,, Nov. 2020 [bibTex]
- Sérgio Guerreiro and Pedro Manuel Moreira Vaz Antunes de Sousa, Generation of concern-based business process views, presented at 13th IFIP WG 8.1 working conference on the Practice of Enterprise Modelling (PoEM2020),, Nov. 2020 [bibTex]
- Sérgio Guerreiro and Rosa, M., On IT Risk Management Ontology using DEMO, presented at 12th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management,, Nov. 2020 [bibTex]
- Mário Cardoso and Jacinto Estima and Bruno Martins, Spatio-Temporal Forecasting With Gridded Remote Sensing Data Using Feed-Backward Decoding, presented at Proceedings of the 28th International Conference on Advances in Geographic Information Systems, Nov. 2020 [DOI Article link] [bibTex]
- Sérgio Guerreiro and Duduka, J., Systemic Business Process Simulation using Agent-Based Simulation and BPMN, presented at 12th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management, Nov. 2020 [bibTex]
- Ricardo Sousa and Conceição Amado and Rui Miguel Carrasqueiro Henriques, AutoMTS: fully autonomous processing of multivariate time series data from heterogeneous sensor networks, presented at 16th EAI Int. Conference on Heterogeneous Networking for Quality, Reliability, Security and Robustness (QShine), Oct. 2020 [bibTex]
- Francisco Miguel Consciência Neves and Anna Carolina Nametala Finamore do Couto and Rui Miguel Carrasqueiro Henriques, Efficient discovery of emerging patterns in heterogeneous spatiotemporal data from mobile sensors, presented at 17th EAI International Conference on Mobile and Ubiquitous Systems: Computing, Networking and Services (MobiQuitous), Oct. 2020 [bibTex]
- Andreia Sofia Teixeira and Francisco C. Santos and A. P. Francisco and Fernando P. Santos, Fairness in multiplayer ultimatum games through degree-based role assignment, presented at Conference on Complex Systems 2020, Oct. 2020 [bibTex]
- Diogo Serranito and André Ferreira Ferrão Couto e Vasconcelos and Sérgio Guerreiro and Miguel Correia, Blockchain Ecosystem for Verifiable Qualifications, presented at 2nd Conference on Blockchain Research & Applications for Innovative Networks and Services (BRAINS), Sep. 2020 [bibTex]
- Andreia Sofia Teixeira and Joshua Faskowitz and Olaf Sporns and Luis M. Rocha, Brain Structural Connectivity along the Lifespan: a Metric-Backbone Approach, presented at NetSci 2020, Sep. 2020 [bibTex]
- Pedro Miguel da Cunha Alves and Manuel J. Fonseca and João Carlos Serrenho Dias Pereira and Helena Galhardas, CDRGen: A Clinical Data Registry Generator, presented at International Workshop on Data Management and Analytics for Medicine and Healthcare (in conj. with VLDB), Sep. 2020 [bibTex]
- Rui Carvalho and Alberto Rodrigues da Silva, Discussion Towards a Library of Software Sustainability Requirements, presented at International Workshop on Requirements Engineering for Sustainable Systems (RE4SuSy) at RE'2020, Sep. 2020 [bibTex]
- Ivo Miguel Torrado Gamito and Alberto Rodrigues da Silva, From Rigorous Requirements and User Interfaces Specifications into Software Business Applications, presented at Quality of Information and Communications Technology (QUATIC'2020), Sep. 2020 [bibTex]
- João Miranda and Ana C. R. Paiva and Alberto Rodrigues da Silva, Preliminary Experiences in Requirements-Based Security Testing, presented at Quality of Information and Communications Technology (QUATIC'2020), Sep. 2020 [bibTex]
- José António Menezes and João Saraiva and Alberto Rodrigues da Silva, Citizen-Centric and Multi-Curator Document Automation Platform: the Curator Perspective, presented at International Conference on Information Systems Development'2019, Aug. 2020 [bibTex]
- David Filipe Borges Perreira and João F. Ferreira and Alexandra Mendes, Evaluating the Accuracy of Password Strength Meters using Off-The-Shelf Guessing Attacks, presented at 2020 IEEE International Symposium on Software Reliability Engineering Workshops (ISSREW) – 5th International Workshop on Reliability and Security Data Analysis (RSDA), Aug. 2020 [bibTex] [PDF]
- Carlos Eduardo Rodrigues Lemonde Macedo and Elisabete Arsénio and Rui Miguel Carrasqueiro Henriques, Exploring multimodal mobility patterns withbig data in the city of Lisbon, presented at European Transport Conference (ETC), Aug. 2020 [bibTex]
- Sofia Maria Pais Cerqueira and Elisabete Arsénio and Rui Miguel Carrasqueiro Henriques, Integrative analysis of traffic and situationalcontext data to support urban mobility planning, presented at European Transport Conference (ETC), Aug. 2020 [bibTex]
- Sérgio Guerreiro and Viktor Vasylkovskyi and João Sequeira, Blockchain-based Architecture to Enforce Privacy in Human Robot Interaction, presented at 2nd International Workshop on Blockchain Technologies for Robotic Systems (BCT4ROS) on the 29th IEEE International Conference on Robot & Human Interactive Communication, Jul. 2020 [bibTex]
- João F. Ferreira and António Pedro Cruz Monteiro and Thomas Durieux and Rui Abreu, SmartBugs: A Framework to Analyze Solidity Smart Contracts, presented at 35th IEEE/ACM International Conference on Automated Software Engineering, Tool Demo Track, Jul. 2020 [bibTex] [PDF]
- Sérgio Guerreiro and Putz and Miguel Correia and André Ferreira Ferrão Couto e Vasconcelos, SSIBAC: Self-Sovereign Identity Based Access Control, 3rd International Workshop on Blockchain Systems and Applications, presented at 19th IEEE International Conference on Trust, Security and Privacy in Computing and Communications, Jul. 2020 [bibTex]
- Rafael Belchior and André Ferreira Ferrão Couto e Vasconcelos and Miguel Correia, Towards Secure, Decentralized, and Automatic Audits with Blockchain, presented at European Conference on Information Systems (ECIS), Jun. 2020 [bibTex]
- José Bernardo Nazaré Barbosa Castelo and H. Sofia Pinto and Alexandre Bernardino and Núria Baylina, Video Based Live Tracking of Fishes in Tanks, presented at International Conference on Image Analysis and Recognition, May. 2020 [bibTex]
- Inês Aires Marinho Marreiros Leite and Anna Carolina Nametala Finamore do Couto and Rui Miguel Carrasqueiro Henriques, Context-sensitive modeling of public transport data, presented at Transport Research Arena (TRA2020), Apr. 2020 [bibTex]
- Pavlo Kovalchuk and Diogo Proença and José Borbinha and Rui Miguel Carrasqueiro Henriques, Moving from formal towards coherent concept analysis: why, when and how, presented at European Conference on Information Retrieval (ECIR2020), Apr. 2020 [DOI Article link] [bibTex]
- Diogo Soares and Rui Miguel Carrasqueiro Henriques and Marta Gromicho and Susana Pinto and Mamede de Carvalho and Sara C. Madeira, Towards Triclustering-Based Classification of Three-Way Clinical Data: A Case Study on Pre-dicting Non-invasive Ventilation in ALS, Apr. 2020 [bibTex]
- Zorana Ikonić and Valentina Andjelković and Dušan Savić and Alberto Rodrigues da Silva, Development DSL for data dictionary using MPS, presented at 24th International Conference on Information Technology, Mar. 2020 [DOI Article link] [bibTex]
- Sérgio Guerreiro and Husaria, A., Requirement Engineering and the Role of Design Thinking, presented at Proceedings of the 22nd International Conference on Enterprise Information Systems - (Volume 2), ICEIS, Mar. 2020 [bibTex]
- Sérgio Guerreiro and Pedro Manuel Moreira Vaz Antunes de Sousa and Aparício, M., Towards an automated DEMO Action Model Implementation using Blockchain Smart Contracts, presented at Proceedings of the 22nd International Conference on Enterprise Information Systems - (Volume 2), ICEIS, Mar. 2020 [bibTex]
- Alberto Rodrigues da Silva and Carolina Lisboa Sequeira, Towards a Library of Usability Requirements, presented at ACM SAC’2020 Conference, Feb. 2020 [bibTex]
- Miguel E. Coimbra and A. P. Francisco and Luís M. S. Russo and Guillermo de Bernardo and Susana Ladra and Gonzalo Navarro, On dynamic succinct graph representations, presented at Data Compression Conference (DCC), Jan. 2020 [bibTex]

Dissertations

PhD Theses: 2

2020

- Henry Silva Vieira advised by Pável Calado, Enrichment of products catalogs from social media, PhD Thesis at Universidade Federal do Amazonas, work in progresson 2020 [bibTex]
- Tiago Eugénio de Melo advised by Pável Calado, Enriquecimento de Catálogos de Produtos Baseados em Aspectos, PhD Thesis at Universidade Federal do Amazonas, work in progresson 2020 [bibTex]

MSc Theses: 52

2022

- Manuel Goulão advised by Arlindo L. Oliveira, Aceleração da Aprendizagem por Reforço Usando Arquitecturas de Redes Neuronais Profundas Baseadas em Transformadores, MSc Thesis at Instituto Superior Técnico, Oct. 2022 [bibTex]
- António Farinha Pereira advised by Arlindo L. Oliveira, Metodos para Segmentação de Imagens usando Arquitecturas como Mecanismos de Atenção, MSc Thesis at Instituto Superior Técnico, Oct. 2022 [bibTex]
- Gonçalo Valente de Oliveira advised by Arlindo L. Oliveira and Catarina Fonseca, Prognostico de Acidentes Vasculares Cerebrais com Base em Tomografia Computorizada Usando a Aprendizagem Profunda, MSc Thesis, Oct. 2022 [bibTex]

2021

- Yevheniya Derevyanko advised by Sérgio Guerreiro, Collaborative discovery and enrichment of business process models using a semantification approach, MSc Thesis at Instituto Superior Técnico, work in progresson 2021 [bibTex]
- Catarina Mendes Martins advised by Mário J. Silva, Identifying patient subgroups in chronic diseases by phenotypic clustering, MSc Thesis at Instituto Superior Técnico, Oct. 2021 [bibTex]
- Luisa Costa advised by Susana Vinga and Alexandra Carvalho, Using Markov Chains and Temporal Alignment to Identify Clinical Patterns in Dementia, MSc Thesis at Instituto Superior Técnico, Oct. 2021 [bibTex]
- Maria Guerreiro Dias Coelho advised by André Ferreira Ferrão Couto e Vasconcelos, Privacy by Design Enterprise Architecture Patterns, MSc Thesis at Instuto Superior Tecnico, Aug. 2021 [bibTex]
- Ana Rita Lopes Borges Martins advised by Susana Vinga and Alexandra Carvalho, Dynamic Bayesian networks for clinical decision support on ankylosing spondylitis patients under biological therapies, MSc Thesis, Jul. 2021 [bibTex]
- Alexandre Almeida Abreu advised by Susana Vinga and Alexandra Carvalho, Predicting Ankylosing Spondylitis Treatment Outcome Using Model-based Methods, MSc Thesis, Jul. 2021 [bibTex]
- Rodrigo Amado Pascoal da Graça advised by Rui Miguel Carrasqueiro Henriques and Diogo Ferreira, An exploratory analysis of Portuguese hospital relationships on behalf of financial sustainability, MSc Thesis, Feb. 2021 [bibTex]
- Sofia Maria Pais Cerqueira advised by Rui Miguel Carrasqueiro Henriques and Elisabete Arsénio, Análise de fluxos na rede pública de autocarros de Lisboa, MSc Thesis, Feb. 2021 [bibTex]
- Carlos Eduardo Rodrigues Lemonde Macedo advised by Rui Miguel Carrasqueiro Henriques and Elisabete Arsénio, Descoberta de padrões circulação multimodal apartir de fontes heterógeneas de dados urbanos, MSc Thesis, Feb. 2021 [bibTex]
- Leonardo Duarte Rodrigues Alexandre advised by Rui Miguel Carrasqueiro Henriques and Rafael Costa, Descoberta de padrões em dados oncológicos para a compreensão dos factores de risco cirúrgico, MSc Thesis, Feb. 2021 [bibTex]
- Susana Chambel Gonçalves Correia Gomes advised by Rui Miguel Carrasqueiro Henriques and Susana Vinga, Estudo de causalidade numa rede de distribuição de água com recurso a séries temporais multivariadas, MSc Thesis, Feb. 2021 [bibTex]
- João Paulo da Costa Campos advised by Rodrigo Rodrigues, A Scalable and Performant Permissionless Blockchain, MSc Thesis, Jan. 2021 [bibTex]
- Pedro Miguel da Silva Roque advised by H. Sofia Pinto and A. P. Francisco, Analysis of retweeting behaviour on Twitter, MSc Thesis, Jan. 2021 [bibTex]
- Dinis Lourenço Tavares Rodrigues advised by Arlindo L. Oliveira and Mário Figueiredo, Automated Assessment of Coronary Artery Stenosis in X-ray Angiography using Deep Neural Networks, MSc Thesis, Jan. 2021 [bibTex]
- Viktor Vasylkovskyi advised by Sérgio Guerreiro and João Silva Sequeira, BlockRobot: Increasing Privacy in Human Robot Interaction by Using Blockchain, MSc Thesis at Instuto Superior Tecnico, Jan. 2021 [bibTex]
- Vasco de Campos Candeias advised by Susana Vinga and Alexandra Carvalho, Cloud-based web application for multivariate time series analysis: A language-agnostic integrative architecture for short- and long-running machine learning algorithms, MSc Thesis, Jan. 2021 [bibTex]
- Alexandre João Gomes Borges advised by Arlindo L. Oliveira, Combining Off and On-policy Training in Deep Reinforcement Learning, MSc Thesis at IST, Jan. 2021 [bibTex]
- Luis Miguel Santos Neto advised by André Ferreira Ferrão Couto e Vasconcelos and Ricardo Ribeiro, Contact Agent Assistant, MSc Thesis, Jan. 2021 [bibTex]
- Gonçalo Nuno Paulos Lopes advised by Helena Galhardas and Nuno J. Mamede, Degree Coordination Decision Support System, MSc Thesis, Jan. 2021 [bibTex]
- Paulo Sanchez Lemos Alves advised by Sérgio Guerreiro and Pedro Manuel Moreira Vaz Antunes de Sousa, Dynamic Stable Business Process Operation for Cyber Security Enforcement Using Atlas, MSc Thesis at Instituto Superior Técnico, Jan. 2021 [bibTex]
- Edgar Carita Miguéns Santos Meireles advised by H. Sofia Pinto and Nuno Correia, From Movement to Sound and Music, a Computational Creativity approach, MSc Thesis, Jan. 2021 [bibTex]
- Ivo Miguel Torrado Gamito advised by Alberto Rodrigues da Silva, From Rigorous Requirements and User Interfaces Specifications into Software Business Applications: The ASL Approach, MSc Thesis, Jan. 2021 [bibTex]
- Marta Maria Simões Aparicio advised by Sérgio Guerreiro and Pedro Manuel Moreira Vaz Antunes de Sousa, Implementação de Demo Action Model em Blockchain Smart Contracts, MSc Thesis at Instituto Superior Técnico, Jan. 2021 [bibTex]
- Filipa de Matos Marques advised by Arlindo L. Oliveira and A. P. Francisco, Imputation Techiques for Clinical Data of Ischemic Stroke Patients, MSc Thesis at IST, Jan. 2021 [bibTex]
- Hugo Alexandre Resende da Rocha advised by Helena Galhardas, IST CSE Information System, MSc Thesis at Instituto Superior Técnico, Jan. 2021 [bibTex]
- Mariana Sofia de Mendonça Rosa advised by Sérgio Guerreiro and Ruben Pereira, IT Risk Management Ontology from representation to optimization using Enterprise Ontology, MSc Thesis at Instituto Superior Técnico\, Jan. 2021 [bibTex]
- Joana Alter Palhinha advised by Susana Vinga and Alexandra Carvalho, Machine Learning methods for finding predictors of Rheumatoid Arthritis treatment response, MSc Thesis, Jan. 2021 [bibTex]
- Pedro Miguel Guerreiro Quintas advised by H. Sofia Pinto and Rui Pereira Jorge, Music Creation from Found Sounds - An Approach from Computational Creativity, MSc Thesis, Jan. 2021 [bibTex]
- Jorge Miguel da Silva Marques advised by Alberto Rodrigues da Silva and Jacinto Estima, RiverCure Portal: Exploring Geographic Features on Context Definition and Integration with the HiSTAV Hydrometric Toll, MSc Thesis at Instituto Superior Técnico, Jan. 2021 [bibTex]
- Tiago José Ribeiro Teixeira advised by José Borbinha and H. Sofia Pinto, Ser Músico em Portugal - Publicação e Visualização de dados com Solução Mediawiki e Arquitetura MVC, MSc Thesis, Jan. 2021 [bibTex]
- João Santos Teixeira advised by H. Sofia Pinto and Alexandre Bernardino, Tracking animals in underwater videos, MSc Thesis, Jan. 2021 [bibTex]

2020

- Karam Prem Manghnani advised by Mário J. Silva and Danielle Caled, Extração e Visualização de Indicadores de Desinformação (Fake News), MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, Dec. 2020 [bibTex]
- Miguel Terras Froes advised by Mário J. Silva and Bruno Martins, Fenotipagem na Multimorbilidade, MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, Dec. 2020 [bibTex]
- Carolina de Seixas Serra Domingos Barata advised by Susana Vinga and Alexandra Carvalho, Longitudinal and Survival Data Analysis for Rheumatic Diseases Prognoses, MSc Thesis, Dec. 2020 [bibTex]
- André Cristovão Neves Ferreira advised by Susana Vinga and Alexandra Carvalho, Machine Learning and Electronic Medical References: Reuma.pt study, MSc Thesis, Dec. 2020 [bibTex]
- Catarina Pinto Conceição advised by Helena Galhardas and Iona Manolescu, ConnectionLens: Entity and Relationship Extraction from French Textual Data Sources, MSc Thesis, Nov. 2020 [bibTex]
- Francisco Miguel Consciência Neves advised by Rui Miguel Carrasqueiro Henriques and Anna Carolina Nametala Finamore do Couto, Descoberta de padrões emergentes de tráfego na rede de transportes públicos em Lisboa, MSc Thesis, Nov. 2020 [bibTex]
- Cláudio Ascenso Sardinha advised by Rui Miguel Carrasqueiro Henriques, Estudo e previsão da procura na rede pública de bicicletas de Lisboa (GIRA), MSc Thesis, Nov. 2020 [bibTex]
- Luis Ricardo dos Santos Aleixo advised by H. Sofia Pinto and Nuno Correia, From Music to Image, a Computational Creativity Approach, MSc Thesis, Nov. 2020 [bibTex]
- Tiago Bartolomeu Luiz advised by Helena Galhardas, Optimization of Data Cleaning Programs, MSc Thesis, Nov. 2020 [bibTex]
- João Francisco Roberto Martins advised by João F. Ferreira and Rui Abreu, Prioritizing Facebook´s Infer Static Analysis Tool Warnings, MSc Thesis, Nov. 2020 [bibTex]
- Pedro Filipe Cruz Baptista advised by Alberto Rodrigues da Silva, Transformations and Alignments in Project Management Tools: The PSL-v.2020 Experiments, MSc Thesis at IST, Nov. 2020 [bibTex]
- Ana Margarida Pataca da Costa advised by Susana Vinga and Rui Miguel Carrasqueiro Henriques, Unsupervised Anomaly Detection in Water System Networks using Recurrent Neural Networks, MSc Thesis, Nov. 2020 [bibTex]
- Luis Filipe Machado dos Santos advised by José Borbinha and H. Sofia Pinto, Flexible Data Management and Publication with Mediawiki, MSc Thesis, Oct. 2020 [bibTex]
- Marta Gonçalves Barcia Gonzalez advised by Alberto Rodrigues da Silva and Bruno Martins, RiverCure Portal: Collaborative GeoPortal for Curatorship of Digital Resources in the Water Management Domain, MSc Thesis at IST, Oct. 2020 [bibTex]
- David Filipe Borges Perreira advised by João F. Ferreira, Evaluating Password Strength Meters and Password Composition Policies using Guessing Attacks, MSc Thesis, Sep. 2020 [bibTex]
- Francisco Machado Duarte advised by João F. Ferreira and Alberto Abad, IntelliComment: An IDE Plugin to Improve Java Source Code Using Comments, MSc Thesis, Sep. 2020 [bibTex]
- Leonardo Pereira Troeira advised by Alberto Rodrigues da Silva and João Saraiva, qNotify Notification System and Integration with a Document Automation Platform, MSc Thesis at IST, Jul. 2020 [bibTex]

as Editors

Edited Books: 1

2020

- Martin Shepperd and Fernando Brito e Abreu and Alberto Rodrigues da Silva and Ricardo Pérez-Castillo, editors, Quality of Information and Communications Technology (QUATIC 2020), Communications in Computer and Information Science 1266, Sep. 2020, Springer [bibTex]

Other Publications: 2

2021

- João Lebre Pereira and Helena Galhardas and Dennis Shasha, editors, Acronym Expander at SDU@AAAI-21: an Acronym Disambiguation Module, Feb. 2021 [bibTex]

2020

- Oana Balalau and Catarina Pinto Conceição and Helena Galhardas and Ioana Manolescu and Tayeb Merabti and Jingmao You and Youssr Youssef, editors, Graph integration of structured, semistructured and unstructured data for data journalism., Jul. 2020, CoRR abs/2007.12488 [bibTex]

Special Issues of Journals (editor): 1

2020

- Sérgio Guerreiro and Reinhartz-Berger, I., editors, Guest editorial for EMMSAD’2018 special section, Software and Systems Modeling vol. 19 (2), Mar. 2020 [bibTex]

Reports

Technical Reports: 2

2021

2020

- André Patrício and Rafael S. Costa and Rui Miguel Carrasqueiro Henriques, COVID-19 in Portugal: predictability ofhospital-ization, ICU and respiratory-assistance needs, INESC-ID Tec. Rep. 5/2020, Sep. 2020 [bibTex]