Publications

Books

Book Chapters: 4

2021

- Miguel Won, Political Opinions on the Past Web, chapter of In The Past Web, to appear on 2021, Springer [bibTex]
- Miguel Won, Legislative Debates in the Portuguese Assembleia da República, chapter of In The Politics of Legislative Debates, to appear on 2021, Oxford University Press [bibTex]
- José Manuel Nunes Salvador Tribolet and António Maria Trindade Jardim Fernandes, Towards Conscious Enterprises: The Role of Enterprise Engineering in Realizing Living Sciences Paradigms into Management Sciences, chapter of Engineering the Transformation of the Enterprise, Sep. 2021, Springer [bibTex]
- Arlindo L. Oliveira, Artificial Intelligence Applications in Stroke, chapter of Precision Medicine in Stroke, May. 2021, Springer Nature [bibTex]

Articles

International Journal Articles: 56

2022

- Rafael André Pestana Belchior and André Vasconcelos and Sérgio Guerreiro and Miguel Correia, A Survey on Blockchain Interoperability: Past, Present, and Future Trends, article in ACM Computing Surveys, to appear on 2022, ACM [bibTex]
- Rafael André Pestana Belchior and Sérgio Guerreiro and André Vasconcelos and Miguel Correia, A Survey on Business Process View Integration: Past, Present, and Future Applications to Blockchain, article in Business Process Management Journal, to appear on 2022, World Scienti c Publishing Company [bibTex]
- Rafael André Pestana Belchior and André Vasconcelos and Miguel Correia, Hermes: Fault-tolerant middleware for blockchain interoperability, article in Future Generation Computer Systems, to appear on 2022 [bibTex]
- Diogo Lopes Vaz and David Rogério Póvoa de Matos and Miguel Pardal and Miguel Correia, MIRES: Intrusion Recovery for Applications based on Backend-as-a-Service, article in , to appear on 2022, IEEE [bibTex]
- Miguel E. Coimbra and Sérgio Esteves and A. P. Francisco and Luís Veiga, VeilGraph: Incremental Graph Stream Processing, article in Journal of Big Data, to appear on 2022, Springer [bibTex]
- André Patrício and Rafael S. Costa and Rui Miguel Carrasqueiro Henriques, On the challenges of predicting treatment response in Hodgkin’s Lymphoma using transcriptomic data, article in BMC Genomics, May. 2022, BioMed Central Ltd [bibTex]
- Francisco Manuel Alves Pereira Braga and H. Sofia Pinto, Composing Music Inspired by Sculpture: A Cross-Domain Mapping and Genetic Algorithm Approach, article in Entropy vol. 24 (4) pp. 468-491, Mar. 2022, MDPI (https://www.mdpi.com/journal/entropy) [DOI Article link] [bibTex]
- Pedro Rodrigues and Rafael S. Costa and Rui Miguel Carrasqueiro Henriques, Enrichment analysis on regulatory subspaces: a novel direction for the superior description of cellular responses to SARS-CoV-2, article in Computers in Biology and Medicine, Elsevier, Mar. 2022, Elsevier [bibTex]
- Angelos Christos Anadiotis and Oana Balalau and Catarina Conceição and Helena Galhardas and Mhd Yamen Haddad and Ioana Manolescu and Tayeb Merabti and Jingmao You, Graph integration of structured, semistructured and unstructured data for data journalism, article in Information Systems vol. 104, Feb. 2022, Elsevier [bibTex]
- Marta Noronha and Rui Miguel Carrasqueiro Henriques and Sara C. Madeira and Luis E. Zárate, Impact of metrics on biclustering solution and quality: a review, article in Pattern Recognition, Feb. 2022, Elsevier [bibTex]
- Hugo Mochão and Daniel Mateus Gonçalves and Leonardo Duarte Rodrigues Alexandre and Carolina Castro and Duarte Valerio and Pedro Barahona and Daniel Moreira Gonçalves and Paulo Matos da Costa and Rui Miguel Carrasqueiro Henriques and Lucio L. Santos and Rafael S. Costa, IPOscore: an interactive web-based platform for postoperative surgical complications analysis and prediction in the oncology domain, article in Computer Methods and Programs in Biomedicine, Feb. 2022, Elsevier [bibTex]
- Antje Jensch and Marta Lopes and Susana Vinga and Nicole Radde, ROSIE: RObust Sparse ensemble for outlIEr detection and gene selection in cancer omics data, article in Statistical Methods in Medical Research, Feb. 2022 [DOI Article link] [bibTex]
- Ana Bárbara Cardoso and Bruno Martins and Jacinto Estima, A Novel Deep Learning Approach Using Contextual Embeddings for Toponym Resolution, article in ISPRS International Journal of Geo-Information vol. 11 (1), Jan. 2022, MDPI [Article] [DOI Article link] [bibTex] [PDF]
- Rafael André Pestana Belchior and André Vasconcelos and Miguel Correia and Thomas Hardjono, Hermes: Fault-tolerant middleware for blockchain interoperability, article in Future Generation Computer Systems vol. 129 pp. 236-251, Jan. 2022 [DOI Article link] [bibTex]
- Luís M. S. Russo, Range Minimum Queries in Minimal Space, article in Theoretical Computer Science, Jan. 2022, Elsevier [bibTex] [PDF]
- José Farinha and Alberto Rodrigues da Silva, UML Templates Distilled, article in IEEE Access, Jan. 2022, IEEE [DOI Article link] [bibTex]

2021

- Miguel E. Coimbra and Joana Hrotkó and A. P. Francisco and Luís M. S. Russo and Guillermo de Bernardo and Susana Ladra and Gonzalo Navarro, A practical succinct dynamic graph representation, article in Information and Computation, Dec. 2021, Elsevier [Article] [DOI Article link] [bibTex]
- Miguel Won and Jorge Fernandes, Analyzing Twitter networks using graph embeddings: an application to the British case, article in Journal of Computational Social Science, to appear on 2021 [DOI Article link] [bibTex]
- Miguel Won and Jorge Fernandes and Mariana L Fonseca, Closing the Gender Gap in Legislative Debates: The Role of Gender Quotas, article in Political Behavior, to appear on 2021 [DOI Article link] [bibTex]
- Cláudia S. Constantino and Alexandra M. Carvalho and Susana Vinga, Coupling sparse Cox models with clustering of longitudinal transcriptomics data for trauma prognosis, article in BioData Mining, to appear on 2021 [bibTex]
- João Miguel Cordeiro Monteiro and Bruno Martins and Miguel Costa and João Moura Pires, Geospatial Data Disaggregation through Self-Trained Encoder–Decoder Convolutional Models, article in ISPRS International Journal of Geo-Information. vol. 10 (9), to appear on 2021 [DOI Article link] [bibTex]
- Carlos Eduardo Rodrigues Lemonde Macedo and Elisabete Arsénio and Rui Miguel Carrasqueiro Henriques, Integrative Analysis of Multimodal Traffic Data: Addressing Open Challenges using Big Data Analytics in the City of Lisbon, article in European Transport Research Review (ETRR), Dec. 2021 [bibTex]
- Leonardo Duarte Rodrigues Alexandre and Rafael Costa and Lúcio Lara Santos and Rui Miguel Carrasqueiro Henriques, Mining pre-surgical patterns able to discriminate post-surgical outcomes in the oncological domain, article in IEEE Journal of Biomedical and Health Informatics, to appear on 2021, IEEE EMBS [bibTex]
- Sofia Maria Pais Cerqueira and Elisabete Arsénio and Rui Miguel Carrasqueiro Henriques, On How to Incorporate Public Sources of Situational Context in Descriptive and Predictive Models of Traffic Data, article in European Transport Research Review (ETRR), Dec. 2021 [bibTex]
- Daniel Mateus Gonçalves and Rui Miguel Carrasqueiro Henriques and Lucio Santos and Rafael Costa, On the predictability of postoperative complications for cancer patients: a Portuguese cohort study, article in BMC Medical Informatics and Decision Making, to appear on 2021 [bibTex]
- Daniel Mateus Gonçalves and Rui Miguel Carrasqueiro Henriques and Rafael Costa, Predicting postoperative complications in cancer patients: A survey bridging classical and machine learning contributions to postsurgical risk analysis, article in Cancers, MDPI, to appear on 2021 [bibTex]
- Andreia Sofia Teixeira and Szymon Talaga and Trevor James Swanson and Massimo Stella, Revealing semantic and emotional structure of suicide notes with cognitive network science, article in Scientific Reports, to appear on 2021 [bibTex]
- David Rogério Póvoa de Matos and Miguel Pardal and Miguel Correia, Sanare: Pluggable Intrusion Recovery for Web Applications, article in IEEE Transactions on Dependable and Secure Computing, Dec. 2021, IEEE [DOI Article link] [bibTex] [PDF]
- Luís M. S. Russo and A. P. Francisco, Small Longest Tandem Scattered Subsequences., article in Sci. Ann. Comput. Sci. vol. 31 (1) pp. 79-110, to appear on 2021 [Article] [DOI Article link] [bibTex]
- Rui Carvalho and Alberto Rodrigues da Silva, Sustainability Requirements of Digital Twin-Based Systems: A Meta Systematic Literature Review, article in Applied Sciences vol. 11 (5519), to appear on 2021, MDPI [DOI Article link] [bibTex]
- Alberto Rodrigues da Silva, Linguistic Patterns, Styles, and Guidelines for Writing Requirements Specifications: Focus on Use Cases and Scenarios, article in IEEE Access pp. 26, Oct. 2021, IEEE [bibTex]
- Danielle Caled and Mário J. Silva and Bruno Martins and Miguel Won, Multi-label classification of legislative contents with hierarchical label attention networks, article in International Journal on Digital Libraries vol. 2021, Oct. 2021, Springer [DOI Article link] [bibTex]
- Ana T. Freitas and Conceição Calhau and Gonçalo Antunes and Beatriz Araújo and Matilde Bandeira and Sofia Barreira and Filipa Bazenga and Sandra Braz and Daniel Caldeira and Susana Constantino Rosa Santos and Ana Faria and Daniel Faria and Marta Fraga and Beatriz Nogueira-Garcia and Lúcia Gonçalves and Pavlo Kovalchuk and Luísa Lacerda and Hugo Lopes and Daniel Luís and Fábio Medeiros and Ana M. P. Melo and José Melo-Cristino and Ana Miranda and Clara Pereira and Ana Teresa Pinto and João Pinto and Helena Proença and Angélica Ramos and João P.R. Rato and Filipe Rocha and Júlio César Rocha and André Moreira-Rosário and Helena Vazão and Yuliya Volovetska and João-Tiago Guimarães and Fausto J. Pinto, Vitamin D-related polymorphisms and vitamin D levels as risk biomarkers of COVID-19 disease severity, article in Scientific Reports vol. 11 pp. 20837, Oct. 2021, Springer Nature [DOI Article link] [bibTex] [PDF]
- Leonardo Duarte Rodrigues Alexandre and Rafael Costa and Rui Miguel Carrasqueiro Henriques, DI2: prior-free and multi-item discretization of biological data and its applications, article in BMC Bioinformatics, Sep. 2021 [bibTex]
- J P Neto and I Alho and L Costa and S Casimiro and D Valério and Susana Vinga, Dynamic modeling of bone remodeling, osteolytic metastasis and PK/PD therapy: introducing variable order derivatives as a simplification technique, article in , Sep. 2021 [DOI Article link] [bibTex]
- Anabela Barreiro and Cristina Mota and Jorge Baptista and Lucília Chacoto and Paula Carvalho, Linguistic Resources for Paraphrase Generation in Portuguese: A Lexicon-Grammar Approach, article in Language Resources and Evaluation, Sep. 2021, Springer International Publishing [bibTex] [PDF]
- Susana Chambel Gonçalves Correia Gomes and Susana Vinga and Rui Miguel Carrasqueiro Henriques, Spatiotemporal Correlation Feature Spaces to support Anomaly Detection in Water Distribution Networks, article in Water, Sep. 2021, MDPI [bibTex]
- Ana Sara Costa and Isabella M. Lami and Salvatore Greco and José Rui Figueira and José Borbinha, Assigning a house for refugees: an application of a multiple criteria nominal classification method, article in Operational Research vol. 21 pp. 2651-2687, Jul. 2021, Springer Berlin Heidelberg [DOI Article link] [bibTex] [PDF]
- Carolina de Seixas Serra Domingos Barata and AM Rodrigues and H Canhão and Susana Vinga and Alexandra M. Carvalho, Predicting Biologic Therapy Outcome of Patients With Spondyloarthritis: Joint Models for Longitudinal and Survival Analysis, article in JMIR MEDICAL INFORMATICS vol. 9 (7) pp. e26823, Jul. 2021 [DOI Article link] [bibTex]
- João Tiago Aparicio da Costa and Elisabete Arsénio and Rui Miguel Carrasqueiro Henriques, Understanding the impacts of the COVID-19 pandemic on public transportation travel patterns in the city of Lisbon, article in Sustainability, Jul. 2021, MDPI [bibTex]
- Luis Ricardo dos Santos Aleixo and H. Sofia Pinto and Nuno Correia, A Computational Creativity Approach From Music to Images, article in SIGEVOlution vol. 14 (2), Jun. 2021, ACM Special Interest Group on Genetic and Evolutionary Computation [Article] [bibTex]
- Ana Sara Costa and José Rui Figueira and José Borbinha, A multiple criteria socio-technical approach for the Portuguese Army Special Forces recruitment, article in 4OR, Jun. 2021, Springer Berlin Heidelberg [DOI Article link] [bibTex] [PDF]
- Danielle Caled and Mário J. Silva, Digital media and misinformation: An outlook on multidisciplinary strategies against manipulation, article in Journal of Computational Social Science, May. 2021, Springer [DOI Article link] [bibTex]
- Miguel E. Coimbra and A. P. Francisco and Luís Veiga, An analysis of the graph processing landscape, article in Journal of Big Data vol. 8 (55), Apr. 2021, Springer [DOI Article link] [bibTex]
- Alberto Rodrigues da Silva and Dušan Savić, Linguistic Patterns and Linguistic Styles for Requirements Specification: Focus on Data Entities, article in Applied Sciences vol. 11 (9) pp. 34, Apr. 2021, MDPI [DOI Article link] [bibTex]
- Marianne Borderes and Cyrielle Gasc and Emmanuel Prestat and Mariana Galvão Ferrarini and Susana Vinga and Lilia Boucinha and Marie-France Sagot, A comprehensive evaluation of binning methods to recover human gut microbial species from a non-redundant reference gene catalog, article in NAR Genomics and Bioinformatics vol. 3 (1) pp. lqab009, Mar. 2021 [DOI Article link] [bibTex]
- Rafaela C. Cruz and Pedro Reis Costa and Susana Vinga and Ludwig Krippahl and Marta Lopes, A Review of Recent Machine Learning Advances for Forecasting Harmful Algal Blooms and Shellfish Contamination, article in Journal of Marine Science and Engineering vol. 9 (3) pp. 283, Mar. 2021 [DOI Article link] [bibTex]
- André Patrício and Rafael Costa and Rui Miguel Carrasqueiro Henriques, COVID-19 in Portugal: predictability of hospitalization, ICU and respiratory-assistance needs, article in Journal of Medical Internet Research (JMIR, https://www.jmir.org), Mar. 2021 [bibTex]
- Marta Lopes and Eduarda P. Martins and Susana Vinga and Bruno M. Costa, The Role of Network Science in Glioblastoma, article in Cancers vol. 13 (5) pp. 1045, Mar. 2021 [DOI Article link] [bibTex]
- Rui Miguel Carrasqueiro Henriques and Sara C. Madeira, FleBiC: Learning classifiers from high-dimensional biomedical data using discriminative biclusters with non-constant patterns, article in Pattern Recognition, Feb. 2021, Elsevier [bibTex]
- Jorge Luis Fuzeta Serras and Susana Vinga and Alexandra M. Carvalho, Outlier Detection for Multivariate Time Series Using Dynamic Bayesian Networks, article in Applied Sciences-Basel vol. 11 (4), Feb. 2021 [DOI Article link] [bibTex]
- Olaf Sporns and Joshua Faskowitz and Andreia Sofia Teixeira and Sarah A. Cutts and Richard F. Betzel, Dynamic Expression of Brain Functional Systems Disclosed by Fine-Scale Analysis of Edge Time Series, article in Network Neuroscience, Jan. 2021 [DOI Article link] [bibTex]
- João Lobo and Rui Miguel Carrasqueiro Henriques and Sara C. Madeira, G-Tric: generating three-way synthetic datasets with triclustering solutions, article in BMC Bioinformatics, Jan. 2021 [Article] [bibTex]
- Francisco Miguel Consciência Neves and Anna Carolina Nametala Finamore do Couto and Sara C. Madeira and Rui Miguel Carrasqueiro Henriques, Mining actionable patterns of road mobility from heterogeneous traffic data using biclustering, article in IEEE Transactions on Intelligent Transportation Systems, Jan. 2021, IEEE [bibTex]
- Susana Vinga, Structured sparsity regularization for analyzing high-dimensional omics data, article in Briefings in Bioinformatics vol. 22 (1) pp. 77-87, Jan. 2021 [DOI Article link] [bibTex]

International Conferences: 48

2022

- Gil Rocha and Luís Trigo and Henrique Lopes Cardoso and Rui Sousa-Silva and Paula Carvalho and Bruno Martins and Miguel Won, Annotating Arguments in a Corpus of Opinion Articles, presented at International Conference on Language Resources and Evaluation, to appear on 2022 [bibTex]
- Daniel Mateus Gonçalves and Rafael S. Costa and Rui Miguel Carrasqueiro Henriques, Context-situated visualization of biclusters to aid decisions: going beyond subspaces with parallel coordinates, presented at International Conference on Advanced Visual Interfaces (AVI), to appear on 2022 [bibTex]
- Danielle Caled and Paula Carvalho and Mário J. Silva, MINT – Mainstream and Independent News Text Corpus, presented at Proceedings of the International Conference on Computational Processing of the Portuguese Language, PROPOR 2022, to appear on 2022 [bibTex]
- Rui Sousa-Silva and Henrique Lopes Cardoso and Luís Trigo and Gil Rocha and Paula Carvalho and Bruno Martins and Miguel Won, Predicting Argument Density from Multiple Annotations, presented at International Conference on Applications of Natural Language to Information Systems, to appear on 2022 [bibTex]
- Miguel Won and Jorge Fernandes, SS-PT: A Stance and Sentiment Data Set from Portuguese Quoted Tweets, presented at PROPOR 2022, to appear on 2022 [bibTex]
- Paula Carvalho and Bernardo Cunha Matos and Raquel Bento Santos and Fernando Batista and Ricardo Ribeiro, Hate Speech Dynamics Against African descent, Roma and LGBTQI Communities in Portugal, presented at LREC 2022 - 13th Conference on Language Resources and Evaluation, Jun. 2022 [bibTex]
- António Silva Ferreira and Alberto Rodrigues da Silva and Ana C. R. Paiva, Towards the Art of Writing Agile Requirements with User Stories, Acceptance Criteria, and Related Constructs, presented at ENASE'2022, Apr. 2022 [bibTex]
- Thomas Tiam-Lee and Rui Miguel Carrasqueiro Henriques and José Costa and Vasco Manquinho and Helena Galhardas, Consolidation of massive medical emergency events with heterogeneous situational context data sources, presented at 6th International workshop on Data Analytics solutions for Real-LIfe APplications @ EDBT/ICDT 2022, Mar. 2022 [bibTex] [PDF]
- David António Cóias Calhas and Vasco Manquinho and Inês Lynce, Automatic Generation of Neural Architecture Search Spaces, presented at AAAI-2022 Workshop on Combining Learning and Reasoning: Programming Languages, Formalisms, and Representations (CLeaR), Feb. 2022 [bibTex]
- Paulo Dias and Pedro T. Monteiro and Andreia Sofia Teixeira, Functional characterization of transcriptional regulatory networks of yeast species, presented at International School and Conference on Network Science (NetSciX'22), Feb. 2022 [DOI Article link] [bibTex]
- Carlos Martelo Correia and Alberto Rodrigues da Silva, Platform-Independent Specifications for Robotic Process Automation Applications, presented at International Conference on Model-Driven Engineering and Software Development (MODELSWARD'2022), Feb. 2022 [bibTex]

2021

- Carlos Pinheiro and Sérgio Guerreiro and Henrique Mamede, Automation of Enterprise Architecture Discovery based on Event Mining from API Gateway logs: State of the Art, presented at IEEE 23rd Conference on Business Informatics (CBI), to appear on 2021 [DOI Article link] [bibTex]
- Yevheniya Derevyanko and Sérgio Guerreiro and Pedro Manuel Moreira Vaz Antunes de Sousa, Collaborative discovery and enrichment of business process models using a semantification approach, presented at IEEE 23rd Conference on Business Informatics (CBI), to appear on 2021 [DOI Article link] [bibTex]
- Mariana Sofia de Mendonça Rosa and Sérgio Guerreiro and Ruben Pereira, Designing an IT Risk Management Ontology grounded on Systematic Literature Review to reduce implementation effort, presented at 54th HICSS, to appear on 2021 [DOI Article link] [bibTex]
- Ana Sofia Gonçalves Ribeiro and João F. Ferreira and Alexandra Mendes, EcoAndroid: An Android Studio Plugin for Developing Energy-Efficient Java Mobile Applications, presented at 2021 IEEE 21st International Conference on Software Quality, Reliability and Security (QRS), Dec. 2021 [DOI Article link] [bibTex] [PDF]
- João Lourenço Silva and Miguel Nobre Menezes and Beatriz Silva and Tiago Rodrigues and Fausto J. Pinto and Arlindo L. Oliveira, Encoder-decoder architectures for clinically relevant coronary artery segmentation, presented at 11th International Conference on Computational Advances in Bio and medical Sciences, Dec. 2021 [bibTex] [PDF]
- David António Cóias Calhas and Rui Miguel Carrasqueiro Henriques, Fitting Regularized Population Dynamics with Neural Differential Equations, presented at NeurIPS 2021, The Symbiosis of Deep Learning and Differential Equations (DLDE) workshop, Dec. 2021 [bibTex]
- João Vares Coelho and João Magalhães and Bruno Martins, Improving Neural Models for the Retrieval of Relevant Passages to Geographical Queries, presented at International Conference on Advances in Geographic Information, to appear on 2021 [DOI Article link] [bibTex]
- Angelos Christos Anadiotis and Oana Balalau and Théo Bouganim and Francesco Chimienti and Helena Galhardas and M-Y Haddad and Stéphane Horel and Ioana Manolescu and Youssr Youssef, Discovering Conflicts of Interest across Heterogeneous Data Sources with ConnectionLens (demo paper), presented at ACM International Conference on Information and Knowledge Management (CIKM 2021), Nov. 2021 [bibTex]
- Ruxandra-Georgeta Barbulescu and Gonçalo Leote Mestre and Arlindo L. Oliveira and L. Miguel Silveira, Using Recurrent Neural Networks to model the dynamic behaviour of the C. Elegans nervous system, presented at Champalimaud Research Symposium 2021, Oct. 2021 [bibTex]
- João Tiago Aparicio da Costa and Elisabete Arsenio and Rui Miguel Carrasqueiro Henriques, Assessing Robustness in Multimodal Transportation Systems: A case study in Lisbon, presented at European Transport Conference (ETC), Sep. 2021 [bibTex]
- Rafael André Pestana Belchior and André Vasconcelos and Miguel Correia and Thomas Hardjono, Enabling Cross- Jurisdiction Digital Asset Transfer, presented at IEEE International Conference on Services Computing (SCC), Sep. 2021 [bibTex]
- Ana C. L. Gomes and Ana C. R. Paiva and Alberto Rodrigues da Silva, Generating Test Cases from Use Cases and Structured Scenarios: Experiences with the RSL Language, presented at International Conference on Information Systems Development'2021, Sep. 2021 [bibTex]
- Sofia Maria Pais Cerqueira and Elisabete Arsenio and Rui Miguel Carrasqueiro Henriques, Inference of Dynamic Origin-Destination Matrices with Trip and Transfer Status from Individual Smart Card Data, presented at European Transport Conference (ETC), Sep. 2021 [bibTex]
- André Carvalho dos Santos and H. Sofia Pinto and Rui Pereira Jorge and Nuno Correia, MuSyFI - Music Synthesis From Images, presented at International Conference on Computational Creativity, ICCC’21, Sep. 2021 [bibTex]
- João Lourenço Silva and Arlindo L. Oliveira, Using Soft Labels to Model Uncertainty in Medical Image Segmentation, presented at MICCAI Brain Lesion workshop, Sep. 2021 [bibTex] [PDF]
- João Santos Teixeira and H. Sofia Pinto and Núria Baylina and Alexandre Bernardino, Video-based tracking of fishes in the Lisbon Oceanarium, presented at OCEANS 2021, Sep. 2021 [bibTex]
- Thomas Tiam-Lee and Rui Miguel Carrasqueiro Henriques, Where are the Passengers? Individual Passenger Route Choice Estimation from Gate Information in Urban Rail Transit Systems, presented at European Transport Conference (ETC), Sep. 2021 [bibTex]
- Mihail Brinza and Miguel Correia and João Carlos Serrenho Dias Pereira, Virtual Static Security Analyzer for Web Applications, presented at Trustcom, Aug. 2021 [bibTex]
- Andreia Sofia Teixeira and Francisco C. Santos and A. P. Francisco and Fernando Pedro Pascoal dos Santos, Eliciting Fairness in Multiplayer Bargaining through Network-based Role Assignment, presented at 20th International Conference on Autonomous Agents and Multiagent Systems (AAMAS 2021), May. 2021 [bibTex] [PDF]
- Clara Teixeira and André Vasconcelos and Pedro Manuel Moreira Vaz Antunes de Sousa and Maria João Marques, Enterprise Architecture Patterns for GDPR Compliance, presented at 23rd International Conference on Enterprise Information Systems (ICEIS 2021), Apr. 2021 [bibTex]
- Sérgio Guerreiro and José Manuel Nunes Salvador Tribolet, Framing Enterprise Engineering within General System’s Theory: Perspectives of a Human Centered Future, presented at 10th Enterprise Engineering Working Conference (EEWC), Apr. 2021 [bibTex]
- Luis Ricardo dos Santos Aleixo and H. Sofia Pinto and Nuno Correia, From Music to Image, a Computational Creativity Approach, presented at Artificial Intelligence in Music, Sound, Art and Design. EvoMUSART, Apr. 2021 [DOI Article link] [bibTex]
- Maria Dias Coelho and André Vasconcelos and Pedro Manuel Moreira Vaz Antunes de Sousa, Privacy by Design Enterprise Architecture Patterns, presented at 23rd International Conference on Enterprise Information Systems (ICEIS 2021), Apr. 2021 [bibTex]
- Francisco Manuel Alves Pereira Braga and H. Sofia Pinto, Sculpture Inspired Musical Composition, One Possible Approach, presented at Artificial Intelligence in Music, Sound, Art and Design. EvoMUSART, Apr. 2021 [DOI Article link] [bibTex]
- Francisco Casaca and André Vasconcelos, Systematic Selection and Prioritization of Communication Channels in the Healthcare Sector, presented at 23rd International Conference on Enterprise Information Systems (ICEIS 2021), Apr. 2021 [bibTex]
- Leonor Pimenta de Oliveira e Silva and Helena Galhardas and Vasco Manquinho and Rui Miguel Carrasqueiro Henriques, UNIANO: robust and efficient anomaly consensus in time series sensitive to cross-correlated anomaly profiles, presented at SIAM International Conference on Data Mining, Apr. 2021 [bibTex]
- Sérgio Guerreiro and Marta Aparício and Pedro Manuel Moreira Vaz Antunes de Sousa, Decentralized Enforcement of DEMO Action Rules Using Blockchain Smart Contracts, presented at 10th Enterprise Engineering Working Conference (EEWC), Mar. 2021 [bibTex]
- Sérgio Guerreiro and Fernando Antunes, Integrating Benefits Dependency Network in ArchiMate, 10th Enterprise Engineering Working Conference (EEWC, Mar. 2021 [bibTex]
- Ricardo Almeida and Nuno André Silva and André Vasconcelos, “A Machine Learning Approach for Real Time Prediction of Last Minute Medical Appointments No-Shows, presented at 14th International Conference on Health Informatics (HEALTHINF 2021), Feb. 2021 [bibTex]
- João Lebre Pereira and Helena Galhardas and Dennis Shasha, Acronym Expander at SDU@AAAI-21: an Acronym Disambiguation Module, presented at Proceedings of the Workshop on Scientific Document Understanding co-located with 35th AAAI Conference on Artificial Intelligence (SDU@AAAI 2021), Feb. 2021 [bibTex]
- David António Cóias Calhas and Rui Miguel Carrasqueiro Henriques, fMRI Multiple Missing Values Imputation Regularized by a Recurrent Denoiser, presented at Artificial Intelligence in Medicine (AIME), Feb. 2021 [bibTex]
- Sérgio Guerreiro and M. Rosa and R. Pereira, Designing an IT Risk Management Ontology grounded on Systematic Literature Review, presented at Hawaii International Conference on System Sciences, Jan. 2021 [bibTex]
- Sérgio Guerreiro and V. Vasylkovskyi and João Sequeira, Designing and Validating a Blockchain-based Architecture to Enforce Privacy in Human Robot Interaction, presented at Hawaii International Conference on System Sciences, Jan. 2021 [bibTex]
- Tiago Fernandes and André Vasconcelos, Mobile Marketing in Health: User Experience Guiding the Implementation of a Medical Booking Application, presented at Biomedical Engineering Systems and Technologies. BIOSTEC 2020, Jan. 2021 [DOI Article link] [bibTex]
- Sérgio Guerreiro and Marek Sktonica and Marta Aparício and Robert Pergl, Process Digitalization using Blockchain –EU Parliament Elections Case Study, presented at Proceedings of the 9th International Conference on Model-Driven Engineering and Software Development (MODELSWARD), Jan. 2021 [DOI Article link] [bibTex]

Dissertations

PhD Theses: 1

2021

- André Veríssimo advised by Susana Vinga and Arlindo L. Oliveira, Network-based sparse regularization for the identification of disease signatures, PhD Thesis at Instituto Superior Técnico, Feb. 2021 [bibTex]

MSc Theses: 43

2022

- Manuel Goulão advised by Arlindo L. Oliveira, Aceleração da Aprendizagem por Reforço Usando Arquitecturas de Redes Neuronais Profundas Baseadas em Transformadores, MSc Thesis at Instituto Superior Técnico, Oct. 2022 [bibTex]
- António Farinha Pereira advised by Arlindo L. Oliveira, Metodos para Segmentação de Imagens usando Arquitecturas como Mecanismos de Atenção, MSc Thesis at Instituto Superior Técnico, Oct. 2022 [bibTex]
- Gonçalo Valente de Oliveira advised by Arlindo L. Oliveira and Catarina Fonseca, Prognostico de Acidentes Vasculares Cerebrais com Base em Tomografia Computorizada Usando a Aprendizagem Profunda, MSc Thesis, Oct. 2022 [bibTex]

2021

- Yevheniya Derevyanko advised by Sérgio Guerreiro, Collaborative discovery and enrichment of business process models using a semantification approach, MSc Thesis at Instituto Superior Técnico, work in progresson 2021 [bibTex]
- Luis Henrique Vieira Pereira advised by Bruno Martins, Convolutional Neural Networks for the Classification of 3D Medical Images, MSc Thesis, work in progresson 2021 [bibTex]
- João Tiago Aparicio da Costa advised by Rui Miguel Carrasqueiro Henriques, Generative modeling of demand in the public transport network in the city of Lisbon: context-sensitive and multi-modal dynamics, MSc Thesis, Dec. 2021 [bibTex]
- João Daniel Silva advised by Bruno Martins, Deep Learning for Language and Vision, MSc Thesis at Instituto Superior Técnico, Nov. 2021 [bibTex]
- Isabel Rego Raposo advised by H. Sofia Pinto, From Music to Animations, A Computational Creativity Approach, MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, Nov. 2021 [bibTex]
- Diogo Almiro advised by H. Sofia Pinto and José Borbinha, Local Web Application Development, Framework Proposal and Demonstration on Two Case Studies, MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, Nov. 2021 [bibTex]
- André da Silva Pereira advised by Susana Vinga and Marta Lopes, Time Series Analysis and Forecasting of Shellfish Contamination and Safety, MSc Thesis, Nov. 2021 [bibTex]
- Catarina Mendes Martins advised by Mário J. Silva, Identifying patient subgroups in chronic diseases by phenotypic clustering, MSc Thesis at Instituto Superior Técnico, Oct. 2021 [bibTex]
- Martim Zanatti dos Santos Gomes da Silva advised by H. Sofia Pinto and David Martins de Matos, GiTab: Automatic Tablature Music Composition for Classical Guitar, MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, Sep. 2021 [bibTex]
- João Bernardo Almeida Santos advised by Susana Vinga and Alexandra M. Carvalho, Sparse Dynamic Bayesian network estimation using generalized linear models, MSc Thesis, Sep. 2021 [bibTex]
- João Vares Coelho advised by Bruno Martins and João Magalhães, Spatio-Temporal Question Answering Leveraging Neural Language Models for Passage Retrieval, MSc Thesis at Instituto Superior Técnico, Sep. 2021 [bibTex]
- Ana Beatriz Rodrigues Correia advised by Susana Vinga and Alexandra M. Carvalho, Survival analysis of transcriptomic high-dimensional oncological data for the identification of cancer biomarkers, MSc Thesis, Sep. 2021 [bibTex]
- Maria Guerreiro Dias Coelho advised by André Vasconcelos, Privacy by Design Enterprise Architecture Patterns, MSc Thesis at Instuto Superior Tecnico, Aug. 2021 [bibTex]
- Ana Rita Lopes Borges Martins advised by Susana Vinga and Alexandra Carvalho, Dynamic Bayesian networks for clinical decision support on ankylosing spondylitis patients under biological therapies, MSc Thesis, Jul. 2021 [bibTex]
- Alexandre Almeida Abreu advised by Susana Vinga and Alexandra Carvalho, Predicting Ankylosing Spondylitis Treatment Outcome Using Model-based Methods, MSc Thesis, Jul. 2021 [bibTex]
- Rodrigo Amado Pascoal da Graça advised by Rui Miguel Carrasqueiro Henriques and Diogo Ferreira, An exploratory analysis of Portuguese hospital relationships on behalf of financial sustainability, MSc Thesis, Feb. 2021 [bibTex]
- Sofia Maria Pais Cerqueira advised by Rui Miguel Carrasqueiro Henriques and Elisabete Arsénio, Análise de fluxos na rede pública de autocarros de Lisboa, MSc Thesis, Feb. 2021 [bibTex]
- Carlos Eduardo Rodrigues Lemonde Macedo advised by Rui Miguel Carrasqueiro Henriques and Elisabete Arsénio, Descoberta de padrões circulação multimodal apartir de fontes heterógeneas de dados urbanos, MSc Thesis, Feb. 2021 [bibTex]
- Leonardo Duarte Rodrigues Alexandre advised by Rui Miguel Carrasqueiro Henriques and Rafael Costa, Descoberta de padrões em dados oncológicos para a compreensão dos factores de risco cirúrgico, MSc Thesis, Feb. 2021 [bibTex]
- Pedro Miguel da Silva Roque advised by H. Sofia Pinto and A. P. Francisco, Analysis of retweeting behaviour on Twitter, MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, Jan. 2021 [bibTex]
- Dinis Lourenço Tavares Rodrigues advised by Arlindo L. Oliveira and Mário Figueiredo, Automated Assessment of Coronary Artery Stenosis in X-ray Angiography using Deep Neural Networks, MSc Thesis, Jan. 2021 [bibTex]
- Viktor Vasylkovskyi advised by Sérgio Guerreiro and João Silva Sequeira, BlockRobot: Increasing Privacy in Human Robot Interaction by Using Blockchain, MSc Thesis at Instuto Superior Tecnico, Jan. 2021 [bibTex]
- Vasco de Campos Candeias advised by Susana Vinga and Alexandra Carvalho, Cloud-based web application for multivariate time series analysis: A language-agnostic integrative architecture for short- and long-running machine learning algorithms, MSc Thesis, Jan. 2021 [bibTex]
- Alexandre João Gomes Borges advised by Arlindo L. Oliveira, Combining Off and On-policy Training in Deep Reinforcement Learning, MSc Thesis at IST, Jan. 2021 [bibTex]
- Luis Miguel Santos Neto advised by André Vasconcelos and Ricardo Ribeiro, Contact Agent Assistant, MSc Thesis, Jan. 2021 [bibTex]
- Gonçalo Nuno Paulos Lopes advised by Helena Galhardas and Nuno J. Mamede, Degree Coordination Decision Support System, MSc Thesis, Jan. 2021 [bibTex]
- Susana Chambel Gonçalves Correia Gomes advised by Rui Miguel Carrasqueiro Henriques and Susana Vinga, Descriptive and predictive modeling of water distribution network dynamics using multivariate time series data, MSc Thesis, Jan. 2021 [bibTex]
- Paulo Sanchez Lemos Alves advised by Sérgio Guerreiro and Pedro Manuel Moreira Vaz Antunes de Sousa, Dynamic Stable Business Process Operation for Cyber Security Enforcement Using Atlas, MSc Thesis at Instituto Superior Técnico, Jan. 2021 [bibTex]
- Edgar Carita Miguéns Santos Meireles advised by H. Sofia Pinto and Nuno Correia, From Movement to Sound and Music, a Computational Creativity approach, MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, Jan. 2021 [bibTex]
- Ivo Miguel Torrado Gamito advised by Alberto Rodrigues da Silva, From Rigorous Requirements and User Interfaces Specifications into Software Business Applications: The ASL Approach, MSc Thesis, Jan. 2021 [bibTex]
- Marta Maria Simões Aparicio advised by Sérgio Guerreiro and Pedro Manuel Moreira Vaz Antunes de Sousa, Implementação de Demo Action Model em Blockchain Smart Contracts, MSc Thesis at Instituto Superior Técnico, Jan. 2021 [bibTex]
- Filipa de Matos Marques advised by Arlindo L. Oliveira and A. P. Francisco, Imputation Techiques for Clinical Data of Ischemic Stroke Patients, MSc Thesis at IST, Jan. 2021 [bibTex]
- Hugo Alexandre Resende da Rocha advised by Helena Galhardas, IST CSE Information System, MSc Thesis at Instituto Superior Técnico, Jan. 2021 [bibTex]
- Mariana Sofia de Mendonça Rosa advised by Sérgio Guerreiro and Ruben Pereira, IT Risk Management Ontology from representation to optimization using Enterprise Ontology, MSc Thesis at Instituto Superior Técnico\, Jan. 2021 [bibTex]
- Joana Alter Palhinha advised by Susana Vinga and Alexandra Carvalho, Machine Learning methods for finding predictors of Rheumatoid Arthritis treatment response, MSc Thesis, Jan. 2021 [bibTex]
- Pedro Miguel Guerreiro Quintas advised by H. Sofia Pinto and Rui Pereira Jorge, Music Creation from Found Sounds - An Approach from Computational Creativity, MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, Jan. 2021 [bibTex]
- Jorge Miguel da Silva Marques advised by Alberto Rodrigues da Silva and Jacinto Estima, RiverCure Portal: Exploring Geographic Features on Context Definition and Integration with the HiSTAV Hydrometric Toll, MSc Thesis at Instituto Superior Técnico, Jan. 2021 [bibTex]
- João Paulo da Costa Campos advised by Rodrigo Rodrigues, SCALEET: A Scalable and Performant Permissionless Blockchain, MSc Thesis, Jan. 2021 [bibTex]
- Tiago José Ribeiro Teixeira advised by José Borbinha and H. Sofia Pinto, Ser Músico em Portugal - Publicação e Visualização de dados com Solução Mediawiki e Arquitetura MVC, MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, Jan. 2021 [bibTex]
- João Santos Teixeira advised by H. Sofia Pinto and Alexandre Bernardino, Tracking animals in underwater videos, MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, Jan. 2021 [bibTex]

as Editors

Other Publications: 2

2021

- João Lebre Pereira and Helena Galhardas and Dennis Shasha, editors, Acronym Expander at SDU@AAAI-21: an Acronym Disambiguation Module, Feb. 2021 [bibTex]

Special Issues of Journals (editor): 1

2021

- Rapahel Troncy and Harith Alani and H. Sofia Pinto and Freddy Lecue and Alina Bontcheva, editors, Special Issue on Content Credibility, Journal of Web Semantics vol. 71 (11), Nov. 2021, Elsevier [DOI Editorial link] [bibTex]

Reports

Technical Reports: 1

2021