Publications

Books

Books: 1

2022

- Pedro Manuel Moreira Vaz Antunes de Sousa and André Vasconcelos, Enterprise Architecture and Cartography. From practice to theory; from representation to design, book, Nov. 2022, Springer [bibTex]

Book Chapters: 4

2023

- João Tiago Aparicio and Manuela Aparicio and Carlos J. Costa, Design Science in Information Systems and Computing, chapter of Proceedings of International Conference on Information Technology and Applications, to appear on 2023, Springer [bibTex]

2022

- Sérgio Guerreiro and André Vasconcelos and Pedro Manuel Moreira Vaz Antunes de Sousa, Business Process Design, chapter of Enterprise Architecture and Cartography: From Practice to Theory; From Representation to Design, to appear on 2022, Springer International Publishing [bibTex]
- Arlindo L. Oliveira, Towards Trustworthy Artificial Intelligent Systems, chapter of COVID-19 Contact Tracing Applications in Portugal: Effectiveness and Privacy Issues, Sep. 2022, Springer [bibTex]
- Pedro Pais and Jorge dos Santos Oliveira and Romeu Viana and Inês V. Costa and Isabel Sá-Correia and Pedro T. Monteiro and Miguel C. Teixeira, Prediction of Gene and Genomic Regulation in Candida Species, Using the PathoYeastract Database: A Comparative Genomics Approach, chapter of Yeast Functional Genomics. Methods in Molecular Biology, May. 2022, Humana [bibTex]

Articles

International Journal Articles: 60

2023

- Luís M. S. Russo, Searching for a Feedback Vertex Set with the Link-Cut Tree, article in Computational Science, to appear on 2023, Elsevier [bibTex] [PDF]
- João Tiago Aparicio and Elisabete Arsenio and Francisco C. Santos and Rui Miguel Carrasqueiro Henriques, Spatiotemporal trip profiles in public transportation reveal city modular structure, article in Transportation Research Interdisciplinary Perspectives, to appear on 2023 [bibTex]
- Paula Carvalho and Danielle Caled and Cláudia Silva and Fernando Batista and Ricardo Ribeiro, The expression of hate speech against Afro-descendant, Roma, and LGBTQ+ communities in YouTube comments, article in Journal of Language Aggression and Conflict, to appear on 2023 [Article] [DOI Article link] [bibTex]
- Alberto Rodrigues da Silva and Jacinto Estima and Jorge Marques and Ivo Miguel Torrado Gamito and Alexandre Serra and Leonardo Moura and Ana Margarida Ricardo and Luís Mendes and Rui M.L. Ferreira, A Web GIS Platform to Modeling, Simulate and Analyze Flood Events: The RiverCure Portal, article in International Journal of Geo-Information, Jul. 2023, MDPI [bibTex]
- Luis Madeira and Guilherme Queiroz and Rui Miguel Carrasqueiro Henriques, Prepandemic psychotropic drug status in Portugal: a nationwide pharmacoepidemiological profile, article in Scientific Reports, May. 2023, Springer Nature [bibTex]
- Mariana Carrasco and António Rito Silva and Rui Miguel Carrasqueiro Henriques, Detecting fraudulent student communication in a multiple choice online test environment, article in IEEE Transactions on Computational Social Systems, Mar. 2023, IEEE [DOI Article link] [bibTex]
- Luisa Costa and J Colaço and Alexandra M. Carvalho and Andreia Sofia Teixeira and Susana Vinga, Using Markov Chains and Temporal Alignment to Identify Clinical Patterns in Dementia, article in Journal of Biomedical Informatics, Mar. 2023 [bibTex]
- Henrique Lopes Cardoso and Rui Sousa-Silva and Paula Carvalho and Bruno Martins, Argumentation models and their use in corpus annotation: Practice, prospects, and challenges, article in Natural Language Engineering, Feb. 2023, Cambridge University Press [DOI Article link] [bibTex]
- Joana Barreto and Rui Miguel Carrasqueiro Henriques and Silvia Cabral and Bruno Pedro and Cesar Peixoto and Antonio Veloso, Movement Prototypes in a Complex Teamgym Gymnastics Technique on the Vaulting Table and Their Relationship with Judges’ Scores, article in Sensors pp. 23(6), 3240, Feb. 2023 [bibTex]
- Armin Moin and Zahra Mardani Korani and Alberto Rodrigues da Silva and João Carlos Ferreira, Model-Driven Engineering Techniques and Tools for Machine Learning-Enabled IoT Applications: A Scoping Review, article in Sensors vol. 23 (3), Jan. 2023, MDPI [DOI Article link] [bibTex]
- Miguel C. Teixeira and Romeu Viana and Margarida Palma and Jorge dos Santos Oliveira and Mónica Galocha and Marta Neves Mota and Diogo Couceiro and Maria Galhardas Pereira and Miguel Antunes and Inês V Costa and Pedro Pais and Carolina Parada and Claudine Chaouiya and Isabel Sá-Correia and Pedro T. Monteiro, YEASTRACT+: a portal for the exploitation of global transcription regulation and metabolic model data in yeast biotechnology and pathogenesis, article in Nucleic Acids Research vol. 51 pp. D785–D791, Jan. 2023, Oxford University Press [DOI Article link] [bibTex]

2022

- Inês Ferreira and André Vasconcelos, A supervised learning model for medical appointments no-show management, article in International Journal of Medical Engineering and Informatics vol. 14 (1) pp. 90-104, to appear on 2022, Inderscience Enterprises Ltd. [DOI Article link] [bibTex] [Video]
- Rafael Belchior and André Vasconcelos and Sérgio Guerreiro and Miguel Correia, A Survey on Blockchain Interoperability: Past, Present, and Future Trends, article in ACM Computing Surveys, to appear on 2022, ACM [bibTex]
- Rafael Belchior and Sérgio Guerreiro and André Vasconcelos and Miguel Correia, A Survey on Business Process View Integration: Past, Present, and Future Applications to Blockchain, article in Business Process Management Journal, to appear on 2022, World Scienti c Publishing Company [bibTex]
- João Tiago Aparicio and Elisabete Arsenio and Rui Miguel Carrasqueiro Henriques, Assessing Robustness in Multimodal Transportation Systems: A case study in Lisbon, article in European Transport Research Review, to appear on 2022 [bibTex]
- João Nuno Estevão Fidalgo Ferreira Alves and A. P. Francisco and Luís M. S. Russo, Cache-Oblivious Hilbert Curve based Blocking-Scheme for Matrix Transposition, article in Transactions on Mathematical Software, to appear on 2022, ACM [DOI Article link] [bibTex]
- Sérgio Guerreiro, Cooperative Decision-Making to Minimize Biased Perceived Value Effect on Business Process Decisions Using Partially Observable Markov Decision Processes, article in Operations Research Forum vol. 3 (2) pp. 1-26, to appear on 2022, Springer International Publishing [bibTex]
- Pedro Carrilho Ferreira and Ana Rita Francisco and Tiago Rodrigues and Beatriz Silva and Miguel Nobre Menezes and João Coelho da silva and Arlindo L. Oliveira and Fausto J. Pinto, Development of deep learning segmentation models for coronary X-ray angiography: Quality assessment by a new global segmentation score and comparison with human performance, article in Revista Portuguesa de Cardiologia vol. 41 (12) pp. 1011-1021, Dec. 2022, Elsevier [Article] [DOI Article link] [bibTex]
- Leonardo Alexandre and Rafael S. Costa and Rui Miguel Carrasqueiro Henriques, DISA tool: discriminative and informative subspace assessment with categorical and numerical outcomes, article in PLOS ONE, to appear on 2022 [bibTex]
- Rafael Belchior and André Vasconcelos and Miguel Correia, Hermes: Fault-tolerant middleware for blockchain interoperability, article in Future Generation Computer Systems, to appear on 2022 [bibTex]
- Sérgio Guerreiro and João F. Ferreira and Tiago Fonseca and Miguel Correia, Integrating an academic management system with blockchain: A case study, article in Blockchain: Research and Applications vol. 3 (4), Dec. 2022, Elsevier [bibTex]
- João Tiago Aparicio and Elisabete Arsenio and Francisco C. Santos and Rui Miguel Carrasqueiro Henriques, LINES: muLtImodal traNsportation rEsilience analySis, article in Sustainability, to appear on 2022, MDPI [bibTex]
- Diogo Lopes Vaz and David Rogério Póvoa de Matos and Miguel Pardal and Miguel Correia, MIRES: Intrusion Recovery for Applications based on Backend-as-a-Service, article in IEEE Transactions on Cloud Computing, to appear on 2022, IEEE [bibTex]
- Mário Cardoso and André Carlos Ruano Andrade Cavalheiro and Alexandre João Gomes Borges and Ana Filipa Duarte and Amílcar Soares and Maria João Pereira and Nuno Jardim Nunes and Leonardo Azevedo and Arlindo L. Oliveira, Modeling the Geospatial Evolution of COVID-19 using Spatio-temporal Convolutional Sequence-to-sequence Neural Networks, article in ACM Transactions on Spatial Algorithms and Systems vol. 8 (4) pp. 1-19, Dec. 2022, ACM [Article] [DOI Article link] [bibTex]
- Luís M. S. Russo and Diogo Manuel dos Santos Costa and Rui Miguel Carrasqueiro Henriques and Hideo Bannai and A. P. Francisco, Order-Preserving Pattern Matching Indeterminate Strings, article in Information and Computation, to appear on 2022 [bibTex]
- Miguel E. Coimbra and Sérgio Esteves and A. P. Francisco and Luís Veiga, VeilGraph: Incremental Graph Stream Processing, article in Journal of Big Data, to appear on 2022, Springer [bibTex]
- Miguel Garção Silva and Sara C. Madeira and Rui Miguel Carrasqueiro Henriques, Water Consumption Pattern Analysis Using Biclustering: When, Why and How, article in Water, to appear on 2022, MDPI [DOI Article link] [bibTex]
- Miguel Correia and Rafael Belchior and Sérgio Guerreiro and André Vasconcelos, A Survey on Business Process View Integration: Past, Present, and Future Applications to Blockchain, article in Business Process Management Journal vol. 54 (8), Nov. 2022 [bibTex]
- João Palet and Vasco Manquinho and Rui Miguel Carrasqueiro Henriques, Multiple-Input Neural Networks for Time Series Forecasting Incorporating Historical and Prospective Context, article in Data Mining and Knowledge Discovery, Nov. 2022 [bibTex]
- Luís M. S. Russo and Daniel Castro and Aleksandar Ilic and Paolo Romano and Ana D. Correia, Stochastic simulated annealing for directed feedback vertex set, article in Applied Soft Computing vol. 129 pp. 109607, Nov. 2022, Elsevier [Article] [DOI Article link] [Supplementary Material] [bibTex]
- Théo Bouganim and Helena Galhardas and Ioana Manolescu, Efficiently Identifying Disguised Missing Values in Heterogeneous, Text-Rich Data, article in Transactions on Large-Scale Data- and Knowledge-Centered Systems vol. 13410, Oct. 2022, Lecture Notes in Computer Science, Springer [Article] [bibTex]
- João Pedro Lebre Magalhães Pereira and João Casanova and Helena Galhardas and Dennis Shasha, AcX: system, techniques, and experiments for Acronym eXpansion, article in Proceedings of the VLDB Endowment, Sep. 2022, VLDB Endowment [bibTex] [PDF]
- Pedro Galhardo and Alberto Rodrigues da Silva, Combining Rigorous Requirements Specifications with Low-Code Platforms to Rapid Development Software Business Applications, article in Applied Sciences vol. 12 (9556), Sep. 2022, MDPI [DOI Article link] [bibTex]
- Rafael Belchior and Luke Riley and Thomas Hardjono and André Vasconcelos and Miguel Correia, Do You Need a Distributed Ledger Technology Interoperability Solution?, article in Distributed Ledger Technologies: Research and Practice, ACM Journal pp. (accepted), Sep. 2022, ACM [DOI Article link] [bibTex] [Video]
- André Patrício and Marta B. Lopes and Pedro R. Costa and Rafael S. Costa and Rui Miguel Carrasqueiro Henriques and Susana Vinga, Time-lagged correlation analysis of shellfish toxicity reveals predictive links to adjacent areas, species, and environmental conditions, article in Toxins, Sep. 2022 [bibTex]
- Diogo F. Soares and Rui Miguel Carrasqueiro Henriques and Marta Gromicho and Mamede Carvalho and Sara C. Madeira, Learning Prognostic Models Using a Mixture of Biclustering and Triclustering: Predicting the Need for Non-Invasive Ventilation in Amyotrophic Lateral Sclerosis, article in Journal of Biomedical Informatics, Aug. 2022 [bibTex]
- Ana Portugal Melo and Jorge dos Santos Oliveira and Sofia Oliveira and Corinne S. Martin and Ricardo B. Leite, Making European performance and impact assessment frameworks for research infrastructures glocal, article in F1000Research 2022, 11(ELIXIR):278, Aug. 2022 [Article] [DOI Article link] [bibTex]
- José Borbinha and João Manuel Fernandes Cardoso and Castro, Leyla J. and Ekaputra, Fajar J. and Jacquemot, Marie C. and Suchánek, Marek and Miksa, Tomasz, DCSO: towards an ontology for machine-actionable data management plans, article in Journal of Biomedical Semantics vol. 13, Jul. 2022, Springer [DOI Article link] [bibTex]
- Ana Carolina Amaral Peixoto and Marta Martins and Luís Costa and Susana Vinga, Kidney cancer biomarker selection using regularized survival models, article in Cells, Jul. 2022 [bibTex]
- Arlindo L. Oliveira, A blueprint for conscious machines, article in Proceedings of the National Academy of Sciences vol. 119 (23), Jun. 2022 [Article] [DOI Article link] [bibTex]
- Thomas Tiam-Lee and Rui Miguel Carrasqueiro Henriques and Vasco Manquinho, Associative Analysis of Inefficiencies and Station Activity Levels in Emergency Response, article in International Journal of Geo-Information, Jun. 2022 [bibTex]
- Leonor Pimenta de Oliveira e Silva and Magda Carolina Araújo Resende and Helena Galhardas and Vasco Manquinho and Inês Lynce, DeepData: Machine Learning in the Marine Ecosystems, article in Expert Systems With Applications, Jun. 2022 [bibTex]
- Thomas Tiam-Lee and Rui Miguel Carrasqueiro Henriques, Route choice estimation in rail transit systems using smart card data: handling vehicle schedule and walking time uncertainties, article in European Transport and Research Review (ETRR), Jun. 2022 [bibTex]
- Danielle Caled and Mário J. Silva, Digital media and misinformation: An outlook on multidisciplinary strategies against manipulation, article in Journal of Computational Social Science, May. 2022, Springer [DOI Article link] [bibTex]
- André Patrício and Rafael S. Costa and Rui Miguel Carrasqueiro Henriques, On the challenges of predicting treatment response in Hodgkin’s Lymphoma using transcriptomic data, article in BMC Genomics, May. 2022, BioMed Central Ltd [bibTex]
- Marta Contreiras Silva and Patrícia Eugénio and Daniel Pedro de Jesus Faria and Catia Pesquita, Ontologies and Knowledge Graphs in Oncology Research, article in Cancers vol. 14 (8) pp. 1906, Apr. 2022, MDPI Open Access Journals [Article] [DOI Article link] [bibTex] [PDF]
- Francisco Manuel Alves Pereira Braga and H. Sofia Pinto, Composing Music Inspired by Sculpture: A Cross-Domain Mapping and Genetic Algorithm Approach, article in Entropy vol. 24 (4) pp. 468-491, Mar. 2022, MDPI (https://www.mdpi.com/journal/entropy) [DOI Article link] [bibTex]
- Pedro Rodrigues and Rafael S. Costa and Rui Miguel Carrasqueiro Henriques, Enrichment analysis on regulatory subspaces: a novel direction for the superior description of cellular responses to SARS-CoV-2, article in Computers in Biology and Medicine, Elsevier, Mar. 2022, Elsevier [bibTex]
- M Galvao Ferrarini and I Ziska and R Andrade and A Julien-Laferriere and L Duchemin and RM Cesar and A Mary and Susana Vinga and M.-F. Sagot, Totoro: Identifying Active Reactions During the Transient State for Metabolic Perturbations, article in Frontiers in Genetics vol. 13 pp. 815476, Mar. 2022 [DOI Article link] [bibTex]
- Angelos Christos Anadiotis and Oana Balalau and Catarina Conceição and Helena Galhardas and Mhd Yamen Haddad and Ioana Manolescu and Tayeb Merabti and Jingmao You, Graph integration of structured, semistructured and unstructured data for data journalism, article in Information Systems vol. 104, Feb. 2022, Elsevier [bibTex]
- Marta Noronha and Rui Miguel Carrasqueiro Henriques and Sara C. Madeira and Luis E. Zárate, Impact of metrics on biclustering solution and quality: a review, article in Pattern Recognition, Feb. 2022, Elsevier [bibTex]
- Hugo Mochão and Daniel Mateus Gonçalves and Leonardo Duarte Rodrigues Alexandre and Carolina Castro and Duarte Valerio and Pedro Barahona and Daniel Moreira Gonçalves and Paulo Matos da Costa and Rui Miguel Carrasqueiro Henriques and Lucio L. Santos and Rafael S. Costa, IPOscore: an interactive web-based platform for postoperative surgical complications analysis and prediction in the oncology domain, article in Computer Methods and Programs in Biomedicine, Feb. 2022, Elsevier [bibTex]
- Antje Jensch and Marta Lopes and Susana Vinga and Nicole Radde, ROSIE: RObust Sparse ensemble for outlIEr detection and gene selection in cancer omics data, article in Statistical Methods in Medical Research, Feb. 2022 [DOI Article link] [bibTex]
- Ana Bárbara Cardoso and Bruno Martins and Jacinto Estima, A Novel Deep Learning Approach Using Contextual Embeddings for Toponym Resolution, article in ISPRS International Journal of Geo-Information vol. 11 (1), Jan. 2022, MDPI [Article] [DOI Article link] [bibTex] [PDF]
- Rafael Belchior and André Vasconcelos and Miguel Correia and Thomas Hardjono, Hermes: Fault-tolerant middleware for blockchain interoperability, article in Future Generation Computer Systems vol. 129 pp. 236-251, Jan. 2022 [DOI Article link] [bibTex]
- André Mesquita and André Vasconcelos, Heuristics’ Library for Enterprise Architecture and Portfolio Alignment, article in International Journal of Information Technology Project Management vol. 13 (1) pp. 1-23, Jan. 2022 [DOI Article link] [bibTex]
- Luís M. S. Russo, Range Minimum Queries in Minimal Space, article in Theoretical Computer Science, Jan. 2022, Elsevier [bibTex] [PDF]
- José Farinha and Alberto Rodrigues da Silva, UML Templates Distilled, article in IEEE Access, Jan. 2022, IEEE [DOI Article link] [bibTex]

International Conferences: 43

2023

- João Tiago Aparicio and Thomas Tiam-Lee and Carlos J. Costa, Explaining Wikipedia page similarity using network science, presented at World Conference on Information Systems and Technologies, to appear on 2023 [bibTex]
- Sofia Aparicio and João Tiago Aparicio and Manuela Aparicio, Multidimensional and Multilingual Emotional analysis, presented at World Conference on Information Systems and Technologies, to appear on 2023 [bibTex]
- João Tiago Aparicio and Andreas Karatsolis and Carlos J. Costa, Network visualization techniques for story charting: The case of a book in Portuguese, presented at Iberian Conference on Information Systems and Technologies, to appear on 2023 [bibTex]
- João Tiago Aparicio and Thomas Tiam-Lee and Carlos J. Costa, Polarization and similarly of news in Portugal and the Philippines, presented at World Conference on Information Systems and Technologies, to appear on 2023 [bibTex]
- Fábio Cruz and Pedro T. Monteiro and Andreia Sofia Teixeira, Community structure in transcriptional regulatory networks of yeast species, presented at International Conference on ​Complex Networks (CompleNet), Apr. 2023 [bibTex]
- Nuno Marques and André Vasconcelos, DTGov: Digital Transformation of Government Business Processes, presented at 25th International Conference on Enterprise Information Systems (ICEIS), Apr. 2023 [bibTex] [PDF]

2022

- João Miguel Cordeiro Monteiro and Bruno Martins and Miguel Costa and João M. Pires, A Co-Training Approach for Spatial Data Disaggregation, presented at Proceedings of the ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems, to appear on 2022 [bibTex]
- João Tiago Aparicio and Elisabete Arsenio and Rui Miguel Carrasqueiro Henriques, Advances in the spatiotemporal profiling of public transport users in the city of Lisbon, presented at Transport Research Arena (TRA), to appear on 2022 [bibTex]
- Gil Rocha and Luís Trigo and Henrique Lopes Cardoso and Rui Sousa-Silva and Paula Carvalho and Bruno Martins and Miguel Won, Annotating Arguments in a Corpus of Opinion Articles, presented at International Conference on Language Resources and Evaluation, to appear on 2022 [bibTex]
- Daniel Mateus Gonçalves and Rafael S. Costa and Rui Miguel Carrasqueiro Henriques, Context-situated visualization of biclusters to aid decisions: going beyond subspaces with parallel coordinates, presented at International Conference on Advanced Visual Interfaces (AVI), to appear on 2022 [bibTex]
- Sofia Maria Pais Cerqueira and Elisabete Arsenio and Rui Miguel Carrasqueiro Henriques, Is there any best practice principles to estimate bus alighting passengers from incomplete smart card transactions?, presented at Transport Research Arena (TRA), to appear on 2022 [bibTex]
- Danielle Caled and Paula Carvalho and Mário J. Silva, MINT – Mainstream and Independent News Text Corpus, presented at Proceedings of the International Conference on Computational Processing of the Portuguese Language, PROPOR 2022, to appear on 2022 [bibTex]
- Marta Bubicz and Elisabete Arsenio and José Barateiro and Rui Miguel Carrasqueiro Henriques, Planning for more resilient urban transportation systems: Lessons learned from the Covid-19 pandemic, presented at Transport Research Arena (TRA), to appear on 2022 [bibTex]
- Gil Rocha and Bernardo Leite and Luís Trigo and Henrique Lopes Cardoso and Rui Sousa-Silva and Paula Carvalho and Bruno Martins and Miguel Won, Predicting Argument Density from Multiple Annotations, presented at International Conference on Applications of Natural Language to Information Systems, to appear on 2022 [bibTex]
- João Tiago Aparicio and Mário Romão and Carlos J. Costa, Predicting Bitcoin prices: The effect of interest rate, search on the internet, and energy prices, presented at Iberian Conference on Information Systems and Technologies, to appear on 2022 [bibTex]
- Sérgio Guerreiro and Pedro Manuel Moreira Vaz Antunes de Sousa, SemantifyingBPMN: a tool to generate BPMN models using DEMO, presented at ER, to appear on 2022 [bibTex]
- Marina Georgati and João Miguel Cordeiro Monteiro and Bruno Martins and Carsten Keßler, Spatial Disaggregation of Population Subgroups Leveraging Self-Trained Multi-Output Gradient Boosted Regression Trees, presented at Proceedings of the AGILE International Conference on Geographic Information Science, to appear on 2022 [bibTex]
- Miguel Won and Jorge Fernandes, SS-PT: A Stance and Sentiment Data Set from Portuguese Quoted Tweets, presented at PROPOR 2022, to appear on 2022 [bibTex]
- Marta Bubicz and Elisabete Arsenio and Rui Miguel Carrasqueiro Henriques and José Barateiro, Sustainable Urban Mobility in response to Covid-19: What comes next?, presented at EurOMA Forum, to appear on 2022 [bibTex]
- BN Leitão and P Faustino and Susana Vinga, Comparative Evaluation of Classification Indexes and Outlier Detection of Microcytic Anaemias in a Portuguese Sample, presented at 21st EPIA Conference on Artificial Intelligence (EPIA), Nov. 2022 [DOI Article link] [bibTex]
- Sofia Reis and Rui Abreu and Marcelo D'Amorim and Daniel Antunes Bustorff Fortunato, Leveraging Practitioners’ Feedback to Improve a Security Linter, presented at 37th IEEE/ACM International Conference on Automated Software Engineering, Nov. 2022 [bibTex] [PDF]
- André Cordeiro and André Vasconcelos and Miguel Correia, A Catalog of Security Patterns, presented at 29th Conference on Pattern Languages of Programs (PLoP22), Oct. 2022 [bibTex] [Video]
- Tiago João Gaspar Ribeiro de Oliveira and Arlindo L. Oliveira, Assessing Policy, Loss and Planning Combinations in Reinforcement Learning using a New Modular Architecture, presented at EPIA Conference on Artificial Intelligence, Sep. 2022 [DOI Article link] [bibTex]
- Ruxandra-Georgeta Barbulescu and Arlindo L. Oliveira and L. Miguel Silveira, Physics-informed machine learning for reliable predictions of the behavioural dynamics of C. elegans, presented at 2022 Bernstein Conference, Sep. 2022 [DOI Article link] [bibTex]
- Beatriz Vieira and Ana Catarina Fonseca and José Ferro and Arlindo L. Oliveira, Using a Siamese Network to Accurately Detect Ischemic Stroke in Computed Tomography Scans, presented at EPIA Conference on Artificial Intelligence, Sep. 2022 [DOI Article link] [bibTex]
- Gonçalo Filipe Antão Adolfo and Alexandre Bernardino and H. Sofia Pinto and Núria Baylina, Comparison of Methodologies for Detecting Feeding Activity in Aquatic Environment, presented at 26th International Conference on Pattern Recognition (ICPR), Aug. 2022 [DOI Article link] [bibTex]
- J Godinho and AM Carvalho and Susana Vinga, Latent Variable Modelling and Variational Inference for scRNA-seq Differential Expression Analysis, presented at 10th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS), Aug. 2022 [DOI Article link] [bibTex]
- Alexandre Serra and Alberto Rodrigues da Silva and Jacinto Estima, Maestro: An Extensible General-Purpose Data Gathering and Classification Platform, presented at 30th International Conference on Information Systems Development, Aug. 2022 [bibTex]
- Rui Dias Carvalho and Alberto Rodrigues da Silva, Towards the Evaluation of Software Products from an Environmental Sustainability Perspective, presented at 30th International Conference on Information Systems Development, Aug. 2022 [bibTex]
- Bernardo Cunha Matos and Raquel Bento Santos and Paula Carvalho and Ricardo Ribeiro and Fernando Batista, Comparing Different Approaches for Detecting Hate Speech in Online Portuguese Comments, presented at 11th Symposium on Languages, Applications and Technologies (SLATE 2022), Jul. 2022 [DOI Article link] [bibTex]
- Ruxandra-Georgeta Barbulescu and Gabriela Ciuprina and Anton Duca and L. Miguel Silveira, Machine learning techniques to model highly nonlinear multi-field dynamics, presented at Scientific Computing in Electrical Engineering (SCEE) 2022, Jul. 2022 [bibTex]
- Raquel Bento Santos and Bernardo Cunha Matos and Paula Carvalho and Fernando Batista and Ricardo Ribeiro, Semi-Supervised Annotation of Portuguese Hate Speech Across Social Media Domains, presented at 11th Symposium on Languages, Applications and Technologies (SLATE 2022), Jul. 2022 [DOI Article link] [bibTex]
- Maria Gomes Simas Beato Forjó and Daniel Neto and Alberto Abad and H. Sofia Pinto and Joaquim Gago, A new European Portuguese corpus for the study of Psychosis through speech analysis, presented at Proceedings of the Thirteenth Language Resources and Evaluation Conference, LREC2022, Jun. 2022 [bibTex] [PDF]
- Paula Carvalho and Bernardo Cunha Matos and Raquel Bento Santos and Fernando Batista and Ricardo Ribeiro, Hate Speech Dynamics Against African descent, Roma and LGBTQI Communities in Portugal, presented at LREC 2022 - 13th Conference on Language Resources and Evaluation, Jun. 2022 [bibTex]
- António Silva Ferreira and Alberto Rodrigues da Silva and Ana C. R. Paiva, Towards the Art of Writing Agile Requirements with User Stories, Acceptance Criteria, and Related Constructs, presented at ENASE'2022, Apr. 2022 [bibTex]
- Thomas Tiam-Lee and Rui Miguel Carrasqueiro Henriques and José Costa and Vasco Manquinho and Helena Galhardas, Consolidation of massive medical emergency events with heterogeneous situational context data sources, presented at 6th International workshop on Data Analytics solutions for Real-LIfe APplications @ EDBT/ICDT 2022, Mar. 2022 [bibTex] [PDF]
- David António Cóias Calhas and Vasco Manquinho and Inês Lynce, Automatic Generation of Neural Architecture Search Spaces, presented at AAAI-2022 Workshop on Combining Learning and Reasoning: Programming Languages, Formalisms, and Representations (CLeaR), Feb. 2022 [bibTex]
- Paulo Dias and Pedro T. Monteiro and Andreia Sofia Teixeira, Functional characterization of transcriptional regulatory networks of yeast species, presented at International School and Conference on Network Science (NetSciX'22), Feb. 2022 [DOI Article link] [bibTex]
- Ruxandra-Georgeta Barbulescu and Gonçalo Leote Mestre and Arlindo L. Oliveira and L. Miguel Silveira, Modelling the dynamic behaviour of the C. elegans nervous system with machine learning techniques, presented at 6th HBP Student Conference on Interdisciplinary Brain Research, Feb. 2022 [DOI Article link] [bibTex]
- Carlos Martelo Correia and Alberto Rodrigues da Silva, Platform-Independent Specifications for Robotic Process Automation Applications, presented at International Conference on Model-Driven Engineering and Software Development (MODELSWARD'2022), Feb. 2022 [bibTex]

National Conferences: 2

2022

- João Castanheira and Andreia Sofia Teixeira and Sara C. Madeira and Pedro T. Monteiro, Predicting blood donor return in Portugal: the role of demographics, presented at 13th INForum - Simpósio de Informática (INForum'22), Sep. 2022 [bibTex]
- Catarina Pedreira and Rafael Belchior and Miguel Matos and André Vasconcelos, Securing Cross-Chain Asset Transfers on Permissioned Blockchains, presented at First Workshop on Blockchain Technologies and Trusted Execution Environments (BlockTEE 2022), Jun. 2022 [bibTex] [Video]

Dissertations

PhD Theses: 3

2023

- Ambrósio Alves Soares advised by Paula Cristina Negrão Ventura Martins and Alberto Rodrigues da Silva, Melhoria do Processo Legislativo no Âmbito Parlamentar pela Introdução de Tecnologias Digitais, PhD Thesis at Universidade do Algarve, Feb. 2023 [bibTex]
- João Pedro Lebre Magalhães Pereira advised by Helena Galhardas and Dennis Shasha, Towards Effective and Effortless Data Cleaning: from Automatic Approaches to User Involvement, PhD Thesis at Instituto Superior Técnico, Feb. 2023 [bibTex]

2022

- Ana Carolina Amaral Peixoto advised by Susana Vinga and Luís Costa, Computational Biology for Modeling Oncological Omics Data: the way towards personalized medicine, PhD Thesis at Instituto Superior Técnico, Dec. 2022 [bibTex]

MSc Theses: 25

2024

- Francisco Rodrigues advised by H. Sofia Pinto, Síntese e Criação de Som – Desenvolvimento de uma aplicação de suporte à composição conjugando sonoridades musicais diferentes e distintivas, MSc Thesis at Instituto Superior Técnico, Feb. 2024 [bibTex]

2023

- João Rei advised by Rui Miguel Carrasqueiro Henriques, Descrição de caos em átomos frios com base em Inteligência Artificial, MSc Thesis, Dec. 2023 [bibTex]
- Miguel Moreira advised by Rui Miguel Carrasqueiro Henriques, Distribuição espacial de marcadores de neurotransmissão recorrendo a coortes postmortem e modelos animais, MSc Thesis at Instituto Superior Técnico, Dec. 2023 [bibTex]
- Alexandra Rodrigues advised by Rui Miguel Carrasqueiro Henriques, Previsão de neuromarcadores a partir do rastreio molecular de tecidos periféricos, MSc Thesis at Instituto Superior Técnico, Dec. 2023 [bibTex]
- Pedro Branco advised by A. P. Francisco, An algorithmic approach to the comparison of phylogenetic trees and networks, MSc Thesis at Instituto Superior Técnico, Oct. 2023 [bibTex]
- Beatriz Fernandes advised by Rui Miguel Carrasqueiro Henriques, Discovering the determinants of neurogenesis fate from experimental data, MSc Thesis at Instituto Superior Técnico, Oct. 2023 [bibTex]
- Miguel C. Santos advised by Daniel Pedro de Jesus Faria and Jorge dos Santos Oliveira, Data management for genomics, MSc Thesis at Instituto Superior Técnico, Jul. 2023 [bibTex]
- Duarte Ghira advised by Rui Miguel Carrasqueiro Henriques and José Maria Moreira / Nuno da Silva, Aprendizagem de espaços latentes a partir de uma amostra de históricos clínicos para segmentação de perfis e previsão de eventos hospitalares, MSc Thesis at Instituto Superior Técnico, Jun. 2023 [bibTex]
- Tomás Ferreira Lopes advised by Sérgio Guerreiro, FlowTGE: A Tool for Automated Functional Testing of Document Flows from Models Based on BPMN, MSc Thesis at Instituto Superior Técnico, Jun. 2023 [bibTex]
- Beatriz Infante advised by Susana Vinga, Sparse regularization for the analysis of survival cancer data, MSc Thesis at Instituto Superior Técnico, Jun. 2023 [bibTex]
- Inês Pacheco advised by Susana Vinga, Sparse regularization for the analysis of survival cancer data, MSc Thesis at Instituto Superior Técnico, Jun. 2023 [bibTex]

2022

- Joana de Gomes Alves advised by José Borbinha and José Rui Figueira, Avaliação da eficiências das unidades hospitalares, MSc Thesis, work in progresson 2022 [bibTex]
- João Dinis advised by João F. Ferreira and Rui Abreu, Automatic Bug Prioritization of SmartBugs Reports using Machine Learning, MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, Nov. 2022 [bibTex]
- Bernardo Cunha Matos advised by Paula Carvalho and Ricardo Ribeiro, Automatic Hate Speech Detection in Portuguese Social Media Text, MSc Thesis at Instituto Superior Técnico, Nov. 2022 [bibTex]
- Beatriz Neves Leitão advised by Susana Vinga, Classification of microcytic anaemias using machine learning methods, MSc Thesis, Nov. 2022 [bibTex]
- André Anselmo Santos advised by H. Sofia Pinto, Fake News Creative Explanations Through the Use of Poetry A Comparison Study and Fine-Tuning Approach, MSc Thesis at Instituto Superior Técnico, Nov. 2022 [bibTex]
- Jorge Filipe Cerejo advised by Mário J. Silva and José Maria Moreira, Predicting Imminet Health Outcomes from Lab Results, MSc Thesis at Instituto Superior Tecnico, Nov. 2022 [bibTex]
- Raquel Bento Santos advised by Fernando Batista and Paula Carvalho, Semi-Automatic Selection and Annotation of Hate Speech from Social Media, MSc Thesis at Instituto Superior Técnico, Nov. 2022 [bibTex]
- Ana Rita Baião advised by Susana Vinga and Emanuel Gonçalves, Sparse and Interpretable Models for Drug Mechanism-of-Action Discovery, MSc Thesis at Instituto Superior Técnico, Nov. 2022 [bibTex]
- Manuel Goulão advised by Arlindo L. Oliveira, Aceleração da Aprendizagem por Reforço Usando Arquitecturas de Redes Neuronais Profundas Baseadas em Transformadores, MSc Thesis at Instituto Superior Técnico, Oct. 2022 [bibTex]
- Danilo Dias advised by José Borbinha and Pedro Mendonça, Cybersecurity and Social Amplification of Risk in Financial Systems, MSc Thesis at Instituto Superior Técnico, Oct. 2022 [bibTex]
- António Farinha Pereira advised by Arlindo L. Oliveira, Metodos para Segmentação de Imagens usando Arquitecturas como Mecanismos de Atenção, MSc Thesis at Instituto Superior Técnico, Oct. 2022 [bibTex]
- Gonçalo Valente de Oliveira advised by Arlindo L. Oliveira and Catarina Fonseca, Prognostico de Acidentes Vasculares Cerebrais com Base em Tomografia Computorizada Usando a Aprendizagem Profunda, MSc Thesis, Oct. 2022 [bibTex]
- Filipe Cerveira do Amaral advised by H. Sofia Pinto and Bruno Martins, Argumentation mining from textual documents combining deep learning and reasoning, MSc Thesis at Instituto Superior Técnico, Jun. 2022 [bibTex]
- Michael Sousa Madeira advised by Susana Vinga and Alexandra Carvalho, Multivariate Time-Series Modeling of Shellfish Contamination with Dynamic Bayesian Networks, MSc Thesis, Jun. 2022 [bibTex]

as Editors

Other Publications: 6

2022

- David António Cóias Calhas and Rui Miguel Carrasqueiro Henriques, editors, EEG to fMRI Synthesis Benefits from Attentional Graphs of Electrode Relationships, arXiv:2203.03481, to appear on 2022, arXiv [bibTex]
- Vasco D. Silva and Anna Carolina Nametala Finamore do Couto and Rui Miguel Carrasqueiro Henriques, editors, On the Role of Multi-Objective Optimization to the Transit Network Design Problem, arXiv:2201.11616, to appear on 2022, arXiv [bibTex]
- Luís Madeira and Guilherme Queiroz and Rui Miguel Carrasqueiro Henriques, editors, Psychotropic drugs in Portugal from 2016 to 2019: a nationwide pharmacoepidemiological profile, 2022.09.14.22279819, Dec. 2022, medRxiv [bibTex]
- Leonardo Duarte Rodrigues Alexandre and Rafael Costa and Rui Miguel Carrasqueiro Henriques, editors, Scaling pattern mining through non-overlapping variable partitioning, arXiv:2212.05340, to appear on 2022, arXiv [bibTex]
- Marta Bubicz and Elisabete Arsenio and Rui Miguel Carrasqueiro Henriques and José Barateiro, editors, Sustainable Urban Mobility Measures in Response to Covid-19 a Systematic Literature Review and Emerging Policy Challenges, 10.2139/ssrn.4055178, to appear on 2022, SSRN [bibTex]
- Miguel Silva and Rui Miguel Carrasqueiro Henriques and Sara C. Madeira, editors, User-Specific Bicluster-based Collaborative Filtering: Handling Preference Locality, Sparsity and Subjectivity, arXiv:2211.08366, to appear on 2022, arXiv [bibTex]

Special Issues of Journals (editor): 1

2022

- Alberto Rodrigues da Silva and Luis Olsina, editors, Special Issue on Requirements Engineering, Practice and Research, Applied Sciences vol. 12 (23), Nov. 2022, MDPI [DOI Editorial link] [bibTex]