Publications

Articles

International Journal Articles: 4

2018

- Nuno D. Mendes and Rui Miguel Carrasqueiro Henriques and Elisabeth Remy and Jorge Carneiro and Pedro T. Monteiro and Claudine Chaouiya, Estimating attractor reachability in asynchronous logical models, article in Frontiers in Physiology vol. 9 pp. 1161, Jul. 2018 [DOI Article link] [bibTex]
- Rui Miguel Carrasqueiro Henriques and Sara C. Madeira, Triclustering Algorithms for Three-Dimensional Data Analysis: A Comprehensive Survey, article in ACM Computing Surveys (CSUR) vol. 51 pp. 1-43, Jun. 2018 [DOI Article link] [bibTex]

2017

- Rui Miguel Carrasqueiro Henriques and Sara C. Madeira, BSig: Evaluating the Statistical Significance of Biclustering Solutions, article in Data Mining and Knowledge Discovery vol. 32 (1) pp. 124–161, Oct. 2017, Springer [DOI Article link] [bibTex]
- Rui Miguel Carrasqueiro Henriques and Francisco Luis Sarreira Lourenço Ferreira and Sara C. Madeira, BicPAMS: software for biological data analysis with pattern-based biclustering, article in BMC Bioinformatics vol. 18 (82), Feb. 2017 [DOI Article link] [bibTex]

International Conferences: 3

2019

- Rui Miguel Carrasqueiro Henriques and Anna Carolina Nametala Finamore do Couto and Marco Antonio Casanova, On the Discovery of Educational Patterns using Biclustering, presented at 15th International Conference on Intelligent Tutoring Systems (ITS), May. 2019 [bibTex]

2018

- Rui Policarpo Duarte and Rui Miguel Carrasqueiro Henriques and Horácio C. Neto, FPGA-based OpenCL Accelerator for Discovering Temporal Patterns in Gene Expression Data Using Biclustering', presented at PBio 2018 Proceedings of the 6th International Workshop on Parallelism in Bioinformatics , Sep. 2018 [DOI Article link] [bibTex]
- Rui Miguel Carrasqueiro Henriques and Sara C. Madeira, Order-preserving Pattern Matching Indeterminate Strings, presented at Symposium on Combinatorial Pattern Matching (CPM), Jun. 2018 [bibTex]