Publications
Filter Publications: 2019 - 2021
Books
Book Chapters: 1
2019
- , Analysis of MOEA/D Approaches for Inferring Ancestral Relationships, chapter of Hybrid Artificial Intelligence Systems. LNAI Vol. 11734, Jun. 2019, Springer [bibTex]
Articles
International Journal Articles: 11
2020
- , GPU Acceleration of Fitch's Parsimony on Protein Data: From Kepler to Turing, article in Journal of Supercomputing pp. 1-26, to appear on 2020, Springer [DOI Article link] [bibTex]
- , Inter-algorithm Multiobjective Cooperation for Phylogenetic Reconstruction on Amino Acid Data, article in IEEE Transactions on Cybernetics pp. 1-14, to appear on 2020, IEEE [DOI Article link] [bibTex]
2019
- , A Multi-Objective Optimization Procedure for Solving the High-Order Epistasis Detection Problem, article in Expert Systems With Applications vol. 142 pp. 1-15, to appear on 2019, Pergamon-Elsevier Science [DOI Article link] [bibTex]
- , Multi-objective Memetic Meta-heuristic Algorithm for Encoding the Same Protein with Multiple Genes, article in Expert Systems With Applications vol. 136 pp. 83-93, to appear on 2019, Pergamon-Elsevier Science [DOI Article link] [bibTex]
- , Multi-Objective Protein Encoding: Redefinition of the Problem, New Problem-aware Operators, and Approach based on Variable Neighborhood Search, article in Information Sciences vol. 500 pp. 173-189, to appear on 2019, Elsevier Science [DOI Article link] [bibTex]
- , Parallel evolutionary computation for multiobjective gene interaction analysis, article in Journal of Computational Science vol. 40 (101068) pp. 1-15, to appear on 2019, Elsevier [DOI Article link] [bibTex]
- , Parallel Computing in Bioinformatics: A View from High-Performance, Heterogeneous, and Cloud Computing, article in Journal of Supercomputing vol. 75 (7) pp. 3369-3373, Jul. 2019, Springer [DOI Article link] [bibTex]
- , A Multiobjective Adaptive Approach for the Inference of Evolutionary Relationships in Protein-Based Scenarios, article in Information Sciences vol. 485 (65) pp. 281-300, May. 2019, Elsevier Science [DOI Article link] [bibTex]
- , Comparative Assessment of GPGPU Technologies to Accelerate Objective Functions: A Case Study on Parsimony, article in Journal of Parallel and Distributed Computing vol. 126 pp. 67-81, Apr. 2019, Academic Press-Elsevier Science [DOI Article link] [bibTex]
- , Comparative Analysis of Intra-Algorithm Parallel Multiobjective Evolutionary Algorithms: Taxonomy Implications on Bioinformatics Scenarios, article in IEEE Transactions on Parallel and Distributed Systems vol. 30 (1) pp. 63-78, Jan. 2019, IEEE Computer Society [DOI Article link] [bibTex]
- , Multi-Objective Artificial Bee Colony for Designing Multiple Genes Encoding the Same Protein, article in Applied Soft Computing vol. 74 pp. 90-98, Jan. 2019, Elsevier Science [DOI Article link] [bibTex]
International Conferences: 3
2020
- , Heterogeneous CPU+iGPU Processing for Efficient Epistasis Detection, presented at European Conference on Parallel Processing (EuroPar), Aug. 2020 [DOI Article link] [bibTex]
- , Accelerating 3-way Epistasis Detection with CPU+GPU processing, presented at International Workshop on Job Scheduling Strategies for Parallel Processing (JSSPP), colocated with IPDPS, May. 2020 [bibTex]
- , Exploring the Binary Precision Capabilities of Tensor Cores for Epistasis Detection, presented at 2020 IEEE International Parallel and Distributed Processing Symposium (IPDPS), May. 2020 [bibTex]
as Editors
Special Issues of Journals (editor): 1
2019
- , editors, Special Issue on Parallel Computing in Bioinformatics, Journal of Supercomputing vol. 75 (7), Jul. 2019, Springer [bibTex]