Publications

Books

Book Chapters: 1

2019

- Sergio Santander-Jiménez and Miguel A. Vega-Rodríguez and Leonel Sousa, Analysis of MOEA/D Approaches for Inferring Ancestral Relationships, chapter of Hybrid Artificial Intelligence Systems. LNAI Vol. 11734, Jun. 2019, Springer [bibTex]

Articles

International Journal Articles: 12

2020

- Sergio Santander-Jiménez and Miguel A. Vega-Rodríguez and Antonio Zahinos-Márquez and Leonel Sousa, GPU Acceleration of Fitch's Parsimony on Protein Data: From Kepler to Turing, article in Journal of Supercomputing pp. 1-26, to appear on 2020, Springer [DOI Article link] [bibTex]
- Sergio Santander-Jiménez and Miguel A. Vega-Rodríguez and Leonel Sousa, Inter-algorithm Multiobjective Cooperation for Phylogenetic Reconstruction on Amino Acid Data, article in IEEE Transactions on Cybernetics pp. 1-14, to appear on 2020, IEEE [DOI Article link] [bibTex]

2019

- José M. Granado-Criado and Sergio Santander-Jiménez and Miguel A. Vega-Rodríguez and Álvaro Rubio-Largo, A Multi-Objective Optimization Procedure for Solving the High-Order Epistasis Detection Problem, article in Expert Systems With Applications vol. 142 pp. 1-15, to appear on 2019, Pergamon-Elsevier Science [DOI Article link] [bibTex]
- Belen Gonzalez-Sanchez and Miguel A. Vega-Rodríguez and Sergio Santander-Jiménez, Multi-objective Memetic Meta-heuristic Algorithm for Encoding the Same Protein with Multiple Genes, article in Expert Systems With Applications vol. 136 pp. 83-93, to appear on 2019, Pergamon-Elsevier Science [DOI Article link] [bibTex]
- Belen Gonzalez-Sanchez and Miguel A. Vega-Rodríguez and Sergio Santander-Jiménez, Multi-Objective Protein Encoding: Redefinition of the Problem, New Problem-aware Operators, and Approach based on Variable Neighborhood Search, article in Information Sciences vol. 500 pp. 173-189, to appear on 2019, Elsevier Science [DOI Article link] [bibTex]
- Francisco Gonçalves and Sergio Santander-Jiménez and Leonel Sousa and José M. Granado-Criado and Aleksandar Ilic, Parallel evolutionary computation for multiobjective gene interaction analysis, article in Journal of Computational Science vol. 40 (101068) pp. 1-15, to appear on 2019, Elsevier [DOI Article link] [bibTex]
- Miguel A. Vega-Rodríguez and Sergio Santander-Jiménez, Parallel Computing in Bioinformatics: A View from High-Performance, Heterogeneous, and Cloud Computing, article in Journal of Supercomputing vol. 75 (7) pp. 3369-3373, Jul. 2019, Springer [DOI Article link] [bibTex]
- Sergio Santander-Jiménez and Miguel A. Vega-Rodríguez and Leonel Sousa, A Multiobjective Adaptive Approach for the Inference of Evolutionary Relationships in Protein-Based Scenarios, article in Information Sciences vol. 485 (65) pp. 281-300, May. 2019, Elsevier Science [DOI Article link] [bibTex]
- Sergio Santander-Jiménez and Miguel A. Vega-Rodríguez and Jorge Vicente-Viola and Leonel Sousa, Comparative Assessment of GPGPU Technologies to Accelerate Objective Functions: A Case Study on Parsimony, article in Journal of Parallel and Distributed Computing vol. 126 pp. 67-81, Apr. 2019, Academic Press-Elsevier Science [DOI Article link] [bibTex]
- Sergio Santander-Jiménez and Miguel A. Vega-Rodríguez, Comparative Analysis of Intra-Algorithm Parallel Multiobjective Evolutionary Algorithms: Taxonomy Implications on Bioinformatics Scenarios, article in IEEE Transactions on Parallel and Distributed Systems vol. 30 (1) pp. 63-78, Jan. 2019, IEEE Computer Society [DOI Article link] [bibTex]
- Belen Gonzalez-Sanchez and Miguel A. Vega-Rodríguez and Sergio Santander-Jiménez and José M. Granado-Criado, Multi-Objective Artificial Bee Colony for Designing Multiple Genes Encoding the Same Protein, article in Applied Soft Computing vol. 74 pp. 90-98, Jan. 2019, Elsevier Science [DOI Article link] [bibTex]

2018

- Sergio Santander-Jiménez and Miguel Vega-Rodriguez and Leonel Sousa, Multiobjective Frog-Leaping Optimization for the Study of Ancestral Relationships in Protein Data, article in IEEE Transactions on Evolutionary Computation vol. 26 (6) pp. 879-893, Dec. 2018, IEEE [DOI Article link] [bibTex]

International Conferences: 3

2020

- Ricardo Nobre and Aleksandar Ilic and Sergio Santander-Jiménez and Leonel Sousa, Exploring the Binary Precision Capabilities of Tensor Cores for Epistasis Detection, presented at 2020 IEEE International Parallel and Distributed Processing Symposium (IPDPS), May. 2020 [bibTex]

2018

- Sergio Santander-Jiménez and Miguel A. Vega-Rodríguez and Leonel Sousa, Phylogenetic Reconstructions Using an Indicator-Based Bat Algorithm for Multicore Processors, presented at IEEE International Conference on Bioinformatics and Biomedicine 2018 (IEEE BIBM 2018), Dec. 2018 [bibTex]
- Sergio Santander-Jiménez and Miguel A. Vega-Rodríguez and Leonel Sousa, Analysis of Scheduling Policies in Metaheuristics for Evolutionary Biology, presented at 6th International Workshop on Parallelism in Bioinformatics (PBio 2018), Sep. 2018 [DOI Article link] [bibTex]

as Editors

Edited Proceedings: 1

2018

- Miguel A. Vega-Rodríguez and Sergio Santander-Jiménez and José M. Granado-Criado and Rosa M. Badia , editors, Proceedings of the 6th International Workshop on Parallelism in Bioinformatics (PBio 2018), Sep. 2018, Association for Computing Mach [bibTex]

Special Issues of Journals (editor): 1

2019

- Miguel A. Vega-Rodríguez and Sergio Santander-Jiménez, editors, Special Issue on Parallel Computing in Bioinformatics, Journal of Supercomputing vol. 75 (7), Jul. 2019, Springer [bibTex]