Publications

Articles

International Journal Articles: 11

2020

- Pedro T. Monteiro and Tiago Godinho de Ornelas Pedreira and Monica Galocha and Miguel C. Teixeira and Claudine Chaouiya, Assessing regulatory features of the current transcriptional network of Saccharomyces cerevisiae, article in Scientific Reports, Sep. 2020, Nature [DOI Article link] [bibTex]
- Alexandre Lemos and Pedro T. Monteiro and Inês Lynce, Disruptions in Timetables: A Case Study at Universidade de Lisboa, article in Journal of Scheduling, Jun. 2020 [bibTex]
- Gianluca Selvaggio and Sara Canato and Archana Pawar and Pedro T. Monteiro and Patrícia S. Guerreiro and M. Manuela Brás and Florence Janody and Claudine Chaouiya, Hybrid epithelial-mesenchymal phenotypes are controlled by microenvironmental factors, article in Cancer Research vol. 80 (11), Jun. 2020 [DOI Article link] [bibTex]
- Praveen Kumar Guttula and Pedro T. Monteiro and Mukesh Kumar Gupta, A Boolean Logical model for Reprogramming of Testes-derived male Germline Stem Cells into Germline pluripotent stem cells, article in Computer Methods and Programs in Biomedicine vol. 192, Mar. 2020 [DOI Article link] [bibTex]
- Filipe Gouveia and Inês Lynce and Pedro T. Monteiro, Revision of Boolean models of regulatory networks using stable state observations, article in Journal of Computational Biology vol. 27 (2) pp. 144-155, Feb. 2020, Mary Ann Liebert, Inc. [DOI Article link] [bibTex]
- Pedro T. Monteiro and Jorge dos Santos Oliveira and Pedro Pais and Miguel Antunes and Margarida Palma and Mafalda Cavalheiro and Mónica Galocha and Cláudia P Godinho and Luís C Martins and Nuno Bourbon and Marta N Mota and Ricardo A Ribeiro and Romeu Viana and Isabel Sá-Correia and Miguel C Teixeira, YEASTRACT+: a portal for cross-species comparative genomics of transcription regulation in yeasts, article in Nucleic Acids Research vol. 48 pp. D642-D649, Jan. 2020, Oxford University Press [DOI Article link] [bibTex]

2019

- Pedro Varela and Pedro T. Monteiro and Claudine Chaouiya, Impact of Changing Cell-Cell Communication Network in Models of Epithelial Pattern Formation, article in IFAC-PapersOnLine vol. 52 (26) pp. 38-44, Oct. 2019 [DOI Article link] [bibTex]
- Alexandre Lemos and Francisco S. Melo and Pedro T. Monteiro and Inês Lynce, Room Usage Optimization in Timetabling: A Case Study at Universidade de Lisboa, article in Operations Research Perspectives vol. 6 pp. 100092, May. 2019 [DOI Article link] [bibTex]
- Wassim Abou-Jaoudé and Pedro T. Monteiro, On Logical Bifurcation Diagrams, article in Journal of Theoretical Biology vol. 466 pp. 39-63, Apr. 2019 [DOI Article link] [bibTex]
- Pedro Varela and Camila Ramos and Pedro T. Monteiro and Claudine Chaouiya, EpiLog: A software for the logical modelling of epithelial dynamics, article in F1000Research vol. 7 pp. 1145, Mar. 2019, F1000 Research, Ltd. [DOI Article link] [bibTex]
- Alexandre Lemos and Inês Lynce and Pedro T. Monteiro, Repairing Boolean logical models from time-series data using Answer Set Programming, article in Algorithms for Molecular Biology vol. 14 pp. 9, Mar. 2019 [DOI Article link] [bibTex]

International Conferences: 4

2020

- Alexandre Lemos and Pedro T. Monteiro and Inês Lynce, Minimal Perturbation in University Timetabling with Maximum Satisfiability, presented at 17th Intl. Conf. on Constraint Programming, Artificial Intelligence, and Operations Research (CPAIOR'20), Sep. 2020 [DOI Article link] [bibTex]
- Filipe Gouveia and Inês Lynce and Pedro T. Monteiro, ModRev - Model Revision tool for Boolean logical models of biological regulatory networks, presented at 18th Intl. Conf. on Computational Methods in Systems Biology (CMSB'20), Sep. 2020 [DOI Article link] [bibTex]
- Inês Lynce and Pedro T. Monteiro, ITC 2019: University Course Timetabling with MaxSAT, presented at Proceedings of the 13th International Conference on the Practice and Theory of Automated Timetabling - PATAT 2021:, Aug. 2020 [bibTex]

2019

- Filipe Gouveia and Inês Lynce and Pedro T. Monteiro, Model revision of Boolean regulatory networks at stable state, presented at International Symposium on Bioinformatics Research and Applications, May. 2019 [DOI Article link] [bibTex]