Publications

Books

Book Chapters: 1

2022

- Pedro Pais and Jorge dos Santos Oliveira and Romeu Viana and Inês V. Costa and Isabel Sá-Correia and Pedro T. Monteiro and Miguel C. Teixeira, Prediction of Gene and Genomic Regulation in Candida Species, Using the PathoYeastract Database: A Comparative Genomics Approach, chapter of Yeast Functional Genomics. Methods in Molecular Biology, May. 2022, Humana [bibTex]

Articles

International Journal Articles: 7

2022

- Alexandre Lemos and Pedro T. Monteiro and Inês Lynce, Introducing UniCorT: A University Course Timetabling Tool, article in Journal of Scheduling, to appear on 2022, Springer [DOI Article link] [bibTex]
- John Zobolas and Pedro T. Monteiro and Martin Kuiper and Asmund Flobak, Boolean function metrics can assist modelers to check and choose logical rules, article in Journal of Theoretical Biology vol. 538 pp. 111025, Apr. 2022, Elsevier [DOI Article link] [bibTex]

2021

- Praveen Kumar Guttula and Pedro T. Monteiro and Mukesh Kumar Guptaa, Prediction and Boolean logical modelling of synergistic microRNA regulatory networks during reprogramming of male germline pluripotent stem cells, article in Biosystems vol. 207, Sep. 2021, Elsevier [DOI Article link] [bibTex]
- Claudia P. Godinho and Margarida Palma and Jorge dos Santos Oliveira and Marta N. Mota and Miguel Antunes and Miguel C. Teixeira and Pedro T. Monteiro and Isabel Sá-Correia, The N.C.Yeastract and CommunityYeastract databases to study gene and genomic transcription regulation in non-conventional yeasts, article in FEMS Yeast Research, Aug. 2021 [DOI Article link] [bibTex]
- Jorge dos Santos Oliveira and Miguel Antunes and Cláudia P. Godinho and Miguel C. Teixeira and Isabel Sá-Correia and Pedro T. Monteiro, From a genome assembly to full regulatory network prediction: the case study of Rhodotorula toruloides putative Haa1-regulon, article in BMC Bioinformatics, Jul. 2021, accepted [bibTex]
- Pedro Pais and Jorge dos Santos Oliveira and Vanda Almeida and Melike Yilmaz and Pedro T. Monteiro and Miguel C. Teixeira, Transcriptome-wide differences between Saccharomyces cerevisiae and Saccharomyces cerevisiae var. boulardii: clues on host survival and probiotic activity based on promoter sequence variability, article in Genomics vol. 113 (2), Mar. 2021 [DOI Article link] [bibTex]
- Alexandre Lemos and Pedro T. Monteiro and Inês Lynce, Disruptions in Timetables: A Case Study at Universidade de Lisboa, article in Journal of Scheduling vol. 24 (1) pp. 35-48, Feb. 2021 [bibTex]

International Conferences: 1

2022

- Paulo Dias and Pedro T. Monteiro and Andreia Sofia Teixeira, Functional characterization of transcriptional regulatory networks of yeast species, presented at International School and Conference on Network Science (NetSciX'22), Feb. 2022 [DOI Article link] [bibTex]

National Conferences: 1

2022

- Fábio Cruz and Pedro T. Monteiro and Andreia Sofia Teixeira, Community detection for the characterization of transcriptional regulatory networks of yeast species, presented at INForum, Sep. 2022 [bibTex]