Publications
Filter Publications: 2021 - 2023
Articles
International Journal Articles: 5
2022
- , PhyloMissForest: a random forest framework to construct phylogenetic trees with missing data, article in BMC Genomics, to appear on 2022, Springer Nature [bibTex]
- , Stochastic simulated annealing for directed feedback vertex set, article in Applied Soft Computing vol. 129 pp. 109607, Nov. 2022, Elsevier [Article] [DOI Article link] [Supplementary Material] [bibTex]
- , Performance optimization of the MGB hydrological model for multi-core and GPU architectures, article in Environmental Modelling & Software vol. 148 pp. 105271, Feb. 2022, Elsevier [bibTex]
2021
- , Retargeting Tensor Accelerators for Epistasis Detection, article in IEEE Transactions on Parallel and Distributed Systems pp. 15, to appear on 2021, IEEE [bibTex]
- , Mansard Roofline Model: Reinforcing the Accuracy of the Roofs, article in ACM Transactions on Modeling and Performance Evaluation of Computing Systems vol. 6 (2) pp. 1-23, Jun. 2021, ACM [DOI Article link] [bibTex]
International Conferences: 4
2022
- , Tensor-Accelerated Fourth-Order Epistasis Detection on GPUs, presented at 51st International Conference on Parallel Processing (ICPP ’22), Aug. 2022 [DOI Article link] [bibTex] [PDF] [Video]
- , Unlocking Personalized Healthcare on Modern CPUs/GPUs: Three-way Gene Interaction Study, presented at IEEE International Parallel and Distributed Processing Symposium (IPDPS), May. 2022 [bibTex]
2021
- , Fourth-Order Exhaustive Epistasis Detection for the xPU Era, presented at ICPP 2021: 50th International Conference on Parallel Processing, Aug. 2021 [DOI Article link] [bibTex] [Video]
- , HEDAcc: FPGA-based Accelerator for High-order Epistasis Detection, presented at 2021 IEEE 29th Annual International Symposium on Field-Programmable Custom Computing Machines (FCCM), May. 2021 [DOI Article link] [bibTex]
National Conferences: 1
2021
- , Epistasis Detection with DPC++ and OpenCL for Intel CPU and GPU, presented at INFORUM, Sep. 2021 [bibTex]