Publications

Books

Book Chapters: 1

2022

- Pedro Pais and Jorge dos Santos Oliveira and Romeu Viana and Inês V. Costa and Isabel Sá-Correia and Pedro T. Monteiro and Miguel C. Teixeira, Prediction of Gene and Genomic Regulation in Candida Species, Using the PathoYeastract Database: A Comparative Genomics Approach, chapter of Yeast Functional Genomics. Methods in Molecular Biology, May. 2022, Humana [bibTex]

Articles

International Journal Articles: 5

2023

- Miguel C. Teixeira and Romeu Viana and Margarida Palma and Jorge dos Santos Oliveira and Mónica Galocha and Marta Neves Mota and Diogo Couceiro and Maria Galhardas Pereira and Miguel Antunes and Inês V Costa and Pedro Pais and Carolina Parada and Claudine Chaouiya and Isabel Sá-Correia and Pedro T. Monteiro, YEASTRACT+: a portal for the exploitation of global transcription regulation and metabolic model data in yeast biotechnology and pathogenesis, article in Nucleic Acids Research vol. 51 pp. D785–D791, Jan. 2023, Oxford University Press [DOI Article link] [bibTex]

2022

- Ana Portugal Melo and Jorge dos Santos Oliveira and Sofia Oliveira and Corinne S. Martin and Ricardo B. Leite, Making European performance and impact assessment frameworks for research infrastructures glocal, article in F1000Research 2022, 11(ELIXIR):278, Aug. 2022 [Article] [DOI Article link] [bibTex]

2021

- Claudia P. Godinho and Margarida Palma and Jorge dos Santos Oliveira and Marta N. Mota and Miguel Antunes and Miguel C. Teixeira and Pedro T. Monteiro and Isabel Sá-Correia, The N.C.Yeastract and CommunityYeastract databases to study gene and genomic transcription regulation in non-conventional yeasts, article in FEMS Yeast Research, Aug. 2021 [DOI Article link] [bibTex]
- Jorge dos Santos Oliveira and Miguel Antunes and Cláudia P. Godinho and Miguel C. Teixeira and Isabel Sá-Correia and Pedro T. Monteiro, From a genome assembly to full regulatory network prediction: the case study of Rhodotorula toruloides putative Haa1-regulon, article in BMC Bioinformatics, Jul. 2021, accepted [bibTex]
- Pedro Pais and Jorge dos Santos Oliveira and Vanda Almeida and Melike Yilmaz and Pedro T. Monteiro and Miguel C. Teixeira, Transcriptome-wide differences between Saccharomyces cerevisiae and Saccharomyces cerevisiae var. boulardii: clues on host survival and probiotic activity based on promoter sequence variability, article in Genomics vol. 113 (2), Mar. 2021 [DOI Article link] [bibTex]