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Sergio Santander-JiménezINESC-ID |
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- Hybrid Artificial Intelligence Systems. LNAI Vol. 11734
Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Leonel Sousa
Analysis of MOEA/D Approaches for Inferring Ancestral Relationships, Springer, Switzerland
2019
- PhyloMissForest: a random forest framework to construct phylogenetic trees with missing data
Diogo Pinheiro, Sergio Santander-Jiménez, Aleksandar Ilic
BMC Genomics
2022 - Exploiting multi-level parallel metaheuristics and heterogeneous computing to boost phylogenetics
Sergio Santander-Jiménez, Miguel A Vega-Rodríguez, Leonel Sousa
Future Generation Computer Systems vol. 127,
2022 - Retargeting Tensor Accelerators for Epistasis Detection
Ricardo Nobre, Aleksandar Ilic, Sergio Santander-Jiménez, Leonel Sousa
IEEE Transactions on Parallel and Distributed Systems
2021 - GPU Acceleration of Fitch's Parsimony on Protein Data: From Kepler to Turing
Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Antonio Zahinos-Márquez, Leonel Sousa
Journal of Supercomputing DOI 10.1007/s11227-020-03225-x
2020 - Inter-algorithm Multiobjective Cooperation for Phylogenetic Reconstruction on Amino Acid Data
Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Leonel Sousa
IEEE Transactions on Cybernetics DOI 10.1109/TCYB.2020.2995464
2020 - Parallel evolutionary computation for multiobjective gene interaction analysis
Francisco Gonçalves, Sergio Santander-Jiménez, Leonel Sousa, José M. Granado-Criado, Aleksandar Ilic
Journal of Computational Science vol. 40, n. 101068, DOI 10.1016/j.jocs.2019.101068
2020 - Multi-Objective Protein Encoding: Redefinition of the Problem, New Problem-aware Operators, and Approach based on Variable Neighborhood Search
Belen Gonzalez-Sanchez, Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez
Information Sciences vol. 500, DOI 10.1016/j.ins.2019.05.088
2019 - A Multi-Objective Optimization Procedure for Solving the High-Order Epistasis Detection Problem
José M. Granado-Criado, Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Álvaro Rubio-Largo
Expert Systems With Applications vol. 142, DOI 10.1016/j.eswa.2019.113000
2019 - Multi-objective Memetic Meta-heuristic Algorithm for Encoding the Same Protein with Multiple Genes
Belen Gonzalez-Sanchez, Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez
Expert Systems With Applications vol. 136, DOI 10.1016/j.eswa.2019.06.031
2019 - Special Issue on Parallel Computing in Bioinformatics
Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez
Journal of Supercomputing vol. 75, n. 7,
2019 - Parallel Computing in Bioinformatics: A View from High-Performance, Heterogeneous, and Cloud Computing
Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez
Journal of Supercomputing vol. 75, n. 7, DOI 10.1007/s11227-019-02934-2
2019 - A Multiobjective Adaptive Approach for the Inference of Evolutionary Relationships in Protein-Based Scenarios
Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Leonel Sousa
Information Sciences vol. 485, n. 65, DOI 10.1016/j.ins.2019.02.020
2019 - Comparative Assessment of GPGPU Technologies to Accelerate Objective Functions: A Case Study on Parsimony
Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Jorge Vicente-Viola, Leonel Sousa
Journal of Parallel and Distributed Computing vol. 126, DOI 10.1016/j.jpdc.2018.12.006
2019 - Comparative Analysis of Intra-Algorithm Parallel Multiobjective Evolutionary Algorithms: Taxonomy Implications on Bioinformatics Scenarios
Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez
IEEE Transactions on Parallel and Distributed Systems vol. 30, n. 1, DOI 10.1109/TPDS.2018.2854788
2019 - Multi-Objective Artificial Bee Colony for Designing Multiple Genes Encoding the Same Protein
Belen Gonzalez-Sanchez, Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez, José M. Granado-Criado
Applied Soft Computing vol. 74, DOI 10.1016/j.asoc.2018.10.023
2019 - Multiobjective Frog-Leaping Optimization for the Study of Ancestral Relationships in Protein Data
Sergio Santander-Jiménez, Miguel Vega-Rodriguez, Leonel Sousa
IEEE Transactions on Evolutionary Computation vol. 26, n. 6, DOI 10.1109/TEVC.2017.2774599
2018
- IPU-EpiDet: Identifying Gene Interactions on Massively Parallel Graph-Based AI Accelerators
Ricardo Nobre, Aleksandar Ilic, Sergio Santander-Jiménez, Leonel Sousa
38th IEEE International Parallel & Distributed Processing Symposium,
2024 - Interpreting High Order Epistasis Using Sparse Transformers
Miguel Graça, Diogo Augusto Pereira Marques, Sergio Santander-Jiménez, Leonel Sousa, Aleksandar Ilic
IEEE/ACM Conference on Connected Health: Applications, Systems and Engineering Technologies (CHASE), IEEE, IEEE,
2023 - Tensor-Accelerated Fourth-Order Epistasis Detection on GPUs
Ricardo Nobre, Aleksandar Ilic, Sergio Santander-Jiménez, Leonel Sousa
51st International Conference on Parallel Processing (ICPP ’22), ACM, ACM, Bordeaux, France
2022 - Unlocking Personalized Healthcare on Modern CPUs/GPUs: Three-way Gene Interaction Study
Diogo Augusto Pereira Marques, Rafael Torres Campos, Sergio Santander-Jiménez, Zakhar Matveev, Leonel Sousa, Aleksandar Ilic
IEEE International Parallel and Distributed Processing Symposium (IPDPS), IEEE, IEEE,
2022 - Epistasis Detection with DPC++ and OpenCL for Intel CPU and GPU
Rafael Torres Campos, Diogo Augusto Pereira Marques, Sergio Santander-Jiménez, Leonel Sousa, Aleksandar Ilic
INFORUM,
2021 - Fourth-Order Exhaustive Epistasis Detection for the xPU Era
Ricardo Nobre, Aleksandar Ilic, Sergio Santander-Jiménez, Leonel Sousa
ICPP 2021: 50th International Conference on Parallel Processing, Association for Computing Machinery, Association for Computing Machinery, Virtually in Chicago, Illinois, USA - HEDAcc: FPGA-based Accelerator for High-order Epistasis Detection
Gaspar Minderico Ribeiro, Nuno Neves, Sergio Santander-Jiménez, Aleksandar Ilic
2021 IEEE 29th Annual International Symposium on Field-Programmable Custom Computing Machines (FCCM), - Heterogeneous CPU+iGPU Processing for Efficient Epistasis Detection
Rafael Torres Campos, Diogo Augusto Pereira Marques, Sergio Santander-Jiménez, Leonel Sousa, Aleksandar Ilic
European Conference on Parallel Processing (EuroPar), Springer, Cham, vol. 12247, Springer, Cham,
2020 - Exploring the Binary Precision Capabilities of Tensor Cores for Epistasis Detection
Ricardo Nobre, Aleksandar Ilic, Sergio Santander-Jiménez, Leonel Sousa
2020 IEEE International Parallel and Distributed Processing Symposium (IPDPS), IEEE, IEEE, - Accelerating 3-way Epistasis Detection with CPU+GPU processing
Ricardo Nobre, Sergio Santander-Jiménez, Leonel Sousa, Aleksandar Ilic
International Workshop on Job Scheduling Strategies for Parallel Processing (JSSPP), colocated with IPDPS,
2020 - Phylogenetic Reconstructions Using an Indicator-Based Bat Algorithm for Multicore Processors
Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Leonel Sousa
IEEE International Conference on Bioinformatics and Biomedicine 2018 (IEEE BIBM 2018), IEEE Computer Society, IEEE Computer Society, Madrid, Spain - Analysis of Scheduling Policies in Metaheuristics for Evolutionary Biology
Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Leonel Sousa
6th International Workshop on Parallelism in Bioinformatics (PBio 2018), Association for Computing Machinery (ACM), Association for Computing Machinery (ACM),
- Proceedings of the 6th International Workshop on Parallelism in Bioinformatics (PBio 2018)
Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez, José M. Granado-Criado, Rosa M. Badia
Association for Computing Mach, New York, USA
2018